Evidence map›Paper›PMID 25053417›Full record

ArticleThe Journal of biological chemistry2014

The molecular mechanism of Shiga toxin Stx2e neutralization by a single-domain antibody targeting the cell receptor-binding domain.

Alvin W H Lo, Kristof Moonens, Maia De Kerpel, Lea Brys, Els Pardon, Han Remaut, Henri De Greve

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
2.4field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 31 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Review
  5. Article
  6. Review
  7. Review
  8. Article
  9. Structural basis of nanobody recognition of grapevine fanleaf virus and of virus resistance loss.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  10. Article
  11. Article
  12. Use of camel single-domain antibodies for the diagnosis and treatment of zoonotic diseases.Comparative immunology, microbiology and infectious diseases · 2018
    Review
  13. Structural basis of VThe Journal of biological chemistry · 2018
    Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Alvin W H LoFrom Structural and Molecular Microbiology, Structural Biology Research Center, VIB, Structural Biology Brussels, and.
Kristof MoonensFrom Structural and Molecular Microbiology, Structural Biology Research Center, VIB, Structural Biology Brussels, and.
Maia De KerpelFrom Structural and Molecular Microbiology, Structural Biology Research Center, VIB, Structural Biology Brussels, and.
Lea Brysthe Laboratory of Myeloid Cell Immunology, VIB, Vrije Universiteit Brussel, Pleinlaan 2, 1050 Brussels, Belgium.
Els PardonFrom Structural and Molecular Microbiology, Structural Biology Research Center, VIB, Structural Biology Brussels, and.
Han RemautFrom Structural and Molecular Microbiology, Structural Biology Research Center, VIB, Structural Biology Brussels, and.
Henri De GreveFrom Structural and Molecular Microbiology, Structural Biology Research Center, VIB, Structural Biology Brussels, and hdegreve@vub.ac.be.
VIB-VUB Center for Structural Biology · BEVrije Universiteit Brussel · BE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Shiga toxin Stx2e is the major known agent that causes edema disease in newly weaned pigs. This severe disease is characterized by neurological disorders, hemorrhagic lesions, and frequent fatal outcomes. Stx2e consists of an enzymatically active A subunit and five B subunits that bind to a specific glycolipid receptor on host cells. It is evident that antibodies binding to the A subunit or the B subunits of Shiga toxin variants may have the capability to inhibit their cytotoxicity. Here, we report the discovery and characterization of a VHH single domain antibody (nanobody) isolated from a llama phage display library that confers potent neutralizing capacity against Stx2e toxin. We further present the crystal structure of the complex formed between the nanobody (NbStx2e1) and the Stx2e toxoid, determined at 2.8 Å resolution. Structural analysis revealed that for each B subunit of Stx2e, one NbStx2e1 is interacting in a head-to-head orientation and directly competing with the glycolipid receptor binding site on the surface of the B subunit. The neutralizing NbStx2e1 can in the future be used to prevent or treat edema disease.

Indexed as

Protein Structure, TertiaryAmino Acid SequenceAnimalsAntibodies, NeutralizingBinding, CompetitiveBinding SitesCamelids, New WorldCrystallography, X-RayModels, MolecularMolecular Sequence DataProtein BindingProtein SubunitsReceptors, Cell SurfaceSequence Homology, Amino AcidShiga Toxin 2Single-Domain AntibodiesAntibodies, Neutralizingglycolipid receptorProtein SubunitsReceptors, Cell SurfaceShiga Toxin 2Single-Domain AntibodiesBacterial PathogenesisBacterial ToxinBiotechnologyMolecular BiologyStructural Biology

Identifiers

PMID25053417
PMCPMC4155698
OpenAlexW2051307188

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.