Evidence map›Paper›PMID 25053143›Full record

ArticleBiological research2014

Comparative proteomic analysis of different developmental stages of the edible mushroom Termitomyces heimii.

Norasfaliza Rahmad, Jameel R Al-Obaidi, Noraswati Mohd Nor Rashid, Ng Boon Zean, Mohd Hafis Yuswan Mohd Yusoff, Nur Syahidah Shaharuddin, Nor Azreen Mohd Jamil, Norihan Mohd Saleh

Open access · goldAbstract read
In one paragraph

Article in Biological research, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
2.6field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 52 citations in OpenAlex.

  1. Article
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  5. Comparative Proteomics Study on the Postharvest Senescence ofJournal of fungi (Basel, Switzerland) · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Norasfaliza Rahmad
Jameel R Al-Obaidi
Noraswati Mohd Nor Rashid
Ng Boon Zean
Mohd Hafis Yuswan Mohd Yusoff
Nur Syahidah Shaharuddin
Nor Azreen Mohd Jamil
Norihan Mohd Saleh
National Institutes of Biotechnology Malaysia · MYMalaysian Agricultural Research and Development Institute · MY

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundTermitomyces heimii is a basidiomycete fungus that has a symbiotic relationship with termites, and it is an edible mushroom with a unique flavour and texture. T. heimii is also one of the most difficult mushrooms to cultivate throughout the world. Little is known about the growth and development of these mushrooms, and the available information is insufficient or poor. The purpose of this study was to provide a base of knowledge regarding the biological processes involved in the development of T. heimii. The proteomic method of 2 dimensional difference gel electrophoresis 2D-DIGE was used to determine and examine the protein profiles of each developmental stage (mycelium, primordium and fruiting body). Total proteins were extracted by TCA-acetone precipitation.

resultsA total of 271 protein spots were detected by electrophoresis covering pH 3-10 and 10-250 kDa. Selected protein spots were subjected to mass spectrometric analyses with matrix-assisted laser desorption/ionisation (MALDI TOF/TOF). Nineteen protein spots were identified based on peptide mass fingerprinting by matching peptide fragments to the NCBI non-redundant database using MASCOT software. The 19 protein spots were categorised into four major groups through KEGG pathway analysis, as follows: carbohydrate metabolism, energy metabolism, amino acid metabolism and response to environmental stress.

conclusionsThe results from our study show that there is a clear correlation between the changes in protein expression that occur during different developmental stages. Enzymes related to cell wall synthesis were most highly expressed during fruiting body formation compared to the mycelium and primordial stages. Moreover, enzymes involved in cell wall component degradation were up-regulated in the earlier stages of mushroom development.

Indexed as

Chemical PrecipitationDatabases, ProteinFluorescent DyesFruiting Bodies, FungalMass SpectrometryMyceliumProteomeTermitomycesTwo-Dimensional Difference Gel ElectrophoresisFluorescent DyesProteome

Identifiers

PMID25053143
PMCPMC4105490
OpenAlexW2101216828

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.