Evidence map›Paper›PMID 25051884›Full record

ArticleBMC genomics2014

Characterization of the MLO gene family in Rosaceae and gene expression analysis in Malus domestica.

Stefano Pessina, Stefano Pavan, Domenico Catalano, Alessandra Gallotta, Richard G F Visser, Yuling Bai, Mickael Malnoy, Henk J Schouten

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 45 papers.

0numbers the graph read from it
0cells of the map it votes in
45citing papers in PubMed
14.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

45 citing papers in PubMed, 107 citations in OpenAlex.

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  10. MLO Proteins from Tomato (Plants (Basel, Switzerland) · 2022
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  11. CmPMRl and CmPMrs are responsible for resistance to powdery mildew caused by Podosphaera xanthii race 1 in Melon.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2022
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  13. High-Quality Genome Assembly ofFrontiers in plant science · 2022
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  17. Genome-Wide Characterization of theFrontiers in plant science · 2021
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  18. Identification of Candidate Susceptibility Genes toFrontiers in plant science · 2021
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  19. Effect of FeTheScientificWorldJournal · 2021
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  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 2 countries.

Stefano Pessina
Stefano Pavan
Domenico Catalano
Alessandra Gallotta
Richard G F Visser
Yuling Bai
Mickael MalnoyDepartment of Genomics and Biology of Fruit Crops, Fondazione Edmund Mach, via E, Mach 1, 38010 San Michele all'Adige, Italy. mickael.malnoy@fmach.it.
Henk J Schouten
Wageningen University & Research · NLUniversity of Bari Aldo Moro · ITFondazione Edmund Mach · ITNational Research Council · IT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundPowdery mildew (PM) is a major fungal disease of thousands of plant species, including many cultivated Rosaceae. PM pathogenesis is associated with up-regulation of MLO genes during early stages of infection, causing down-regulation of plant defense pathways. Specific members of the MLO gene family act as PM-susceptibility genes, as their loss-of-function mutations grant durable and broad-spectrum resistance.

resultsWe carried out a genome-wide characterization of the MLO gene family in apple, peach and strawberry, and we isolated apricot MLO homologs through a PCR-approach. Evolutionary relationships between MLO homologs were studied and syntenic blocks constructed. Homologs that are candidates for being PM susceptibility genes were inferred by phylogenetic relationships with functionally characterized MLO genes and, in apple, by monitoring their expression following inoculation with the PM causal pathogen Podosphaera leucotricha.

conclusionsGenomic tools available for Rosaceae were exploited in order to characterize the MLO gene family. Candidate MLO susceptibility genes were identified. In follow-up studies it can be investigated whether silencing or a loss-of-function mutations in one or more of these candidate genes leads to PM resistance.

Indexed as

Genes, PlantAscomycotaDisease ResistanceMalusPhylogenyPlant DiseasesPlant ProteinsReal-Time Polymerase Chain ReactionRosaceaeSyntenyTranscription, GeneticPlant Proteins

Identifiers

PMID25051884
PMCPMC4124139
OpenAlexW2075822346

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.