Evidence map›Paper›PMID 25051359›Full record

ArticlePloS one2014

A unique mono- and diacylglycerol lipase from Penicillium cyclopium: heterologous expression, biochemical characterization and molecular basis for its substrate selectivity.

Zhong-Biao Tan, Jian-Fang Li, Xue-Ting Li, Ying Gu, Min-Chen Wu, Jing Wu, Jun-Qing Wang

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.6field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 17 citations in OpenAlex.

  1. Purification, Biochemical and Kinetic Characterization of a Novel AlkalineInternational journal of molecular sciences · 2022
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4 · The record

Corrections and comments

  • Erratum issued
5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Zhong-Biao TanKey Laboratory of Carbohydrate Chemistry and Biotechnology, Ministry of Education, School of Biotechnology, Jiangnan University, Wuxi, 2) Jiangsu Provincial Engineering Laboratory for Biomass Conversion and Process Integration, School of Life Science and Chemical Engineering, Huaiyin Institute of Technology, Huai'an China.
Jian-Fang LiSchool of Food Science and Technology, Jiangnan University, Wuxi, China.
Xue-Ting LiWuxi Medical School, Jiangnan University, Wuxi, China.
Ying GuWuxi Medical School, Jiangnan University, Wuxi, China.
Min-Chen WuWuxi Medical School, Jiangnan University, Wuxi, China.
Jing WuWuxi Medical School, Jiangnan University, Wuxi, China.
Jun-Qing WangKey Laboratory of Carbohydrate Chemistry and Biotechnology, Ministry of Education, School of Biotechnology, Jiangnan University, Wuxi, China.
Jiangnan University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A cDNA gene encoding a mature peptide of the mono- and diacylglycerol lipase (abbreviated to PcMdl) from Penicillium cyclopium PG37 was cloned and expressed in Pichia pastoris GS115. The recombinant PcMdl (rePcMdl) with an apparent molecular weight of 39 kDa showed the highest activity (40.5 U/mL of culture supernatant) on 1,2-dibutyrin substrate at temperature 35°C and pH 7.5. The rePcMdl was stable at a pH range of 6.5-9.5 and temperatures below 35°C. The activity of rePcMdl was inhibited by Hg2+ and Fe3+, but not significantly affected by EDTA or the other metal ions such as Na+, K+, Li+, Mg2+, Zn2+, Ca2+, Mn2+, Cu2+, and Fe2+. PcMdl was identified to be strictly specific to mono- and diacylglycerol, but not triacylglycerol. Stereographic view of PcMdl docked with substrate (tri- or diacylglycerol) analogue indicated that the residue Phe256 plays an important role in conferring the substrate selectivity. Phe256 projects its side chain towards the substrate binding groove and makes the sn-1 moiety difficult to insert in. Furthermore, sn-1 moiety prevents the phosphorus atom (substitution of carboxyl carbon) from getting to the Oγ of Ser145, which results in the failure of triacylglycerol hydrolysis. These results should provide a basis for molecular engineering of PcMdl and expand its applications in industries.

Indexed as

Amino Acid SequenceBacterial ProteinsCatalytic DomainChelating AgentsDiglyceridesEdetic AcidEnzyme StabilityGene ExpressionHydrogen-Ion ConcentrationHydrolysisIronMercuryMolecular Docking SimulationMolecular Dynamics SimulationMolecular Sequence DataMonoacylglycerol LipasesBacterial ProteinsChelating AgentsDiglyceridesEdetic AcidIronMercuryMonoacylglycerol LipasesMonoglycerides

Identifiers

PMID25051359
PMCPMC4106778
OpenAlexW2003924521

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.