Evidence map›Paper›PMID 25050706›Full record

ArticleBiochemistry2014

Dual specificity and novel structural folding of yeast phosphodiesterase-1 for hydrolysis of second messengers cyclic adenosine and guanosine 3',5'-monophosphate.

Yuanyuan Tian, Wenjun Cui, Manna Huang, Howard Robinson, Yiqian Wan, Yousheng Wang, Hengming Ke

Open access · greenAbstract read
In one paragraph

Article in Biochemistry, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
0.6field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 18 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Review
  5. Article
  6. Article
  7. Article
  8. Review
  9. Article
  10. Article
  11. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 5 institutions in 2 countries.

Yuanyuan TianBeijing Laboratory for Food Quality and Safety and Beijing Engineering and Technology Research Center of Food Additives, Beijing Technology and Business University , Beijing 100048, P. R. China.
Wenjun Cui
Manna Huang
Howard Robinson
Yiqian Wan
Yousheng Wang
Hengming Ke
Sun Yat-sen University · CNUniversity of North Carolina at Chapel Hill · USBeijing Technology and Business University · CNBrookhaven National Laboratory · USUNC Lineberger Comprehensive Cancer Center

Funding

Substrate specificity and inhibitor selectivity of PDER01GM059791 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI KE, HENGMING · 2000 to 2013
$3.0M
NIGMS NIH HHS GM59791
6 · The paper itself

Abstract

Cyclic nucleotide phosphodiesterases (PDEs) decompose second messengers cAMP and cGMP that play critical roles in many physiological processes. PDE1 of Saccharomyces cerevisiae has been subcloned and expressed in Escherichia coli. Recombinant yPDE1 has a KM of 110 μM and a kcat of 16.9 s(-1) for cAMP and a KM of 105 μM and a kcat of 11.8 s(-1) for cGMP. Thus, the specificity constant (kcat/KM(cAMP))/(kcat/KM(cGMP)) of 1.4 indicates a dual specificity of yPDE1 for hydrolysis of both cAMP and cGMP. The crystal structures of unliganded yPDE1 and its complex with GMP at 1.31 Å resolution reveal a new structural folding that is different from those of human PDEs but is partially similar to that of some other metalloenzymes such as metallo-β-lactamase. In spite of their different structures and divalent metals, yPDE1 and human PDEs may share a common mechanism for hydrolysis of cAMP and cGMP.

Indexed as

Protein FoldingCyclic AMPCyclic GMPCyclic Nucleotide Phosphodiesterases, Type 1HumansHydrolysisProtein BindingSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsSecond Messenger SystemsSubstrate SpecificityCyclic AMPCyclic GMPCyclic Nucleotide Phosphodiesterases, Type 1Saccharomyces cerevisiae Proteins

Identifiers

PMID25050706
PMCPMC4144708
OpenAlexW2330009142

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.