Evidence map›Paper›PMID 25050625›Full record

ArticlePloS one2014

Functional effect of polymorphisms in the promoter of TNFAIP3 (A20) in acute pancreatitis in the Han Chinese population.

Yugang Liu, Gang Dan, Lijuan Wu, Guangyu Chen, Ailin Wu, Ping Zeng, Wanqing Xu

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed, 1 pooled it
0.9field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 1 synthesis or guideline pooled it, 15 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. International journal of general medicine · 2024
    Article
  4. Article
  5. Article
  6. Genetic Polymorphisms: A Novel Perspective on Acute Pancreatitis.Gastroenterology research and practice · 2017
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Yugang LiuCenter of Laboratory Medicine, Chengdu Military General Hospital, Chengdu, P.R. China.
Gang DanCenter of Laboratory Medicine, Chengdu Military General Hospital, Chengdu, P.R. China.
Lijuan WuCenter of Laboratory Medicine, Chengdu Military General Hospital, Chengdu, P.R. China.
Guangyu ChenDepartment of General Surgery, Chengdu Military General Hospital, Chengdu, P.R. China.
Ailin WuCenter of Laboratory Medicine, Chengdu Military General Hospital, Chengdu, P.R. China.
Ping ZengCenter of Laboratory Medicine, Chengdu Military General Hospital, Chengdu, P.R. China.
Wanqing XuCenter of Laboratory Medicine, Chengdu Military General Hospital, Chengdu, P.R. China.
Chengdu Military General Hospital · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe zinc finger protein A20 is an important negative regulator of inflammation; polymorphisms in the corresponding gene, TNFAIP3, have been reported to be associated with several inflammation diseases. However, only a few studies have focused on the relationship between TNFAIP3 polymorphisms and acute pancreatitis (AP).

methodsWe enrolled 201 healthy controls and 190 acute pancreatitis patients (including 47 systemic inflammatory response syndrome patients) for this study and used DNA sequencing to investigate polymorphisms in the TNFAIP3 promoter. The functional effects of these variants on transcriptional activity, A20 expression, NF-κB activity, and TNF-α and IL-1β levels, after in vitro lipopolysaccharide stimulation, were assessed.

resultsTwo SNPs (rs59693083 and rs5029924) in the TNFAIP3 promoter were selected based on bioinformatic analysis. Neither of these SNPs was associated with susceptibility to AP; however, acute pancreatitis patients who possessed the T allele of rs5029924 were more likely to experience systemic inflammatory response syndrome. Moreover, rs5029924 was found to affect TNFAIP3 promoter activity. After lipopolysaccharide stimulation, the expression of A20 protein significantly decreased, while the activity of NF-κB and the production of TNF-α and IL-1β significantly increased in whole blood leukocytes from subjects with the T allele.

conclusionThe rs5029924 polymorphism in the TNFAIP3 promoter may alter the risk of systemic inflammatory response syndrome in acute pancreatitis patients by influencing the expression of A20 protein.

Indexed as

Polymorphism, Single NucleotidePromoter Regions, GeneticAcute DiseaseAdultChinaDNA-Binding ProteinsFemaleHumansInterleukin-1betaIntracellular Signaling Peptides and ProteinsMaleMiddle AgedNF-kappa BNuclear ProteinsPancreatitisTumor Necrosis Factor-alphaDNA-Binding ProteinsInterleukin-1betaIntracellular Signaling Peptides and ProteinsNF-kappa BNuclear ProteinsTNFAIP3 protein, humanTumor Necrosis Factor-alphaTumor Necrosis Factor alpha-Induced Protein 3

Identifiers

PMID25050625
PMCPMC4106899
OpenAlexW1981819670

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.