Evidence map›Paper›PMID 25050558›Full record

ArticleCancer discovery2014

Rare mutations in RINT1 predispose carriers to breast and Lynch syndrome-spectrum cancers.

Daniel J Park, Kayoko Tao, Florence Le Calvez-Kelm, Tu Nguyen-Dumont, Nivonirina Robinot, Fleur Hammet, Fabrice Odefrey, Helen Tsimiklis, Zhi L Teo, Louise B Thingholm and 27 more

Open access · bronzeAbstract read
In one paragraph

Article in Cancer discovery, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed, 1 pooled it
3.8field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 1 synthesis or guideline pooled it, 43 citations in OpenAlex.

  1. A Systematic Literature Review of Whole Exome and Genome Sequencing Population Studies of Genetic Susceptibility to Cancer.Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology · 2020
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  8. Risk of Late-Onset Breast Cancer in Genetically Predisposed Women.Journal of clinical oncology : official journal of the American Society of Clinical Oncology · 2021
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  15. RINT1 Loss Impairs Retinogenesis Through TRP53-Mediated Apoptosis.Frontiers in cell and developmental biology · 2020
    Article
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

37 authors at 14 institutions in 6 countries.

Daniel J ParkGenetic Epidemiology Laboratory, Department of Pathology;
Kayoko TaoOncological Sciences and.
Florence Le Calvez-KelmGenetic Cancer Susceptibility Group, International Agency for Research on Cancer, Lyon;
Tu Nguyen-DumontGenetic Epidemiology Laboratory, Department of Pathology;
Nivonirina RobinotGenetic Cancer Susceptibility Group, International Agency for Research on Cancer, Lyon;
Fleur HammetGenetic Epidemiology Laboratory, Department of Pathology;
Fabrice OdefreyGenetic Epidemiology Laboratory, Department of Pathology;
Helen TsimiklisGenetic Epidemiology Laboratory, Department of Pathology;
Zhi L TeoGenetic Epidemiology Laboratory, Department of Pathology;
Louise B ThingholmGenetic Epidemiology Laboratory, Department of Pathology;
Erin L YoungOncological Sciences and.
Catherine VoegeleGenetic Cancer Susceptibility Group, International Agency for Research on Cancer, Lyon;
Andrew LonieVictorian Life Sciences Computation Initiative;
Bernard J PopeDepartment of Computing and Information Systems; Victorian Life Sciences Computation Initiative;
Terrell C RoaneUniversity of Texas at Austin, Austin;
Russell BellOncological Sciences and.
Hao HuDepartment of Epidemiology, The University of Texas MD Anderson Cancer Center, Houston, Texas;
ShankaracharyaDepartment of Epidemiology, The University of Texas MD Anderson Cancer Center, Houston, Texas;
Chad D HuffDepartment of Epidemiology, The University of Texas MD Anderson Cancer Center, Houston, Texas;
Jonathan EllisThe QIMR Berghofer Medical Research Institute, Herston, Queensland, Australia; Departments of.
Jun LiThe QIMR Berghofer Medical Research Institute, Herston, Queensland, Australia; Departments of.
Igor V MakuninThe QIMR Berghofer Medical Research Institute, Herston, Queensland, Australia; Departments of.
Esther M JohnCancer Prevention Institute of California, Fremont; Department of Health Research and Policy, Stanford Cancer Institute, Stanford, California;
Irene L AndrulisDepartment of Molecular Genetics, Samuel Lunenfeld Research Institute, Mount Sinai Hospital, Toronto, Ontario, Canada;
Mary B TerryDepartment of Epidemiology, Mailman School of Public Health, Columbia University, New York, New York;
Mary DalyFox Chase Cancer Center, Philadelphia, Pennsylvania;
Saundra S BuysHuntsman Cancer Institute, University of Utah Health Sciences Center, Salt Lake City, Utah;
Carrie SnyderDepartment of Preventive Medicine, Creighton University, Omaha, Nebraska;
Henry T LynchDepartment of Preventive Medicine, Creighton University, Omaha, Nebraska;
Peter DevileeDepartment of Human Genetics, Leiden University Medical Center, Leiden, the Netherlands; and.
Graham G GilesCentre for Epidemiology and Biostatistics, Melbourne School of Population and Global Health, The University of Melbourne, Melbourne; Centre for Cancer Epidemiology, The Cancer Council Victoria, Carlton, Victoria;
John L HopperCentre for Epidemiology and Biostatistics, Melbourne School of Population and Global Health, The University of Melbourne, Melbourne; School of Public Health, Seoul National University, Seoul, Korea.
Bing-Jian FengDermatology, Huntsman Cancer Institute, University of Utah School of Medicine; Huntsman Cancer Institute, University of Utah Health Sciences Center, Salt Lake City, Utah;
Fabienne LesueurGenetic Cancer Susceptibility Group, International Agency for Research on Cancer, Lyon; Genetic Epidemiology of Cancer Team, Institut National de la Santé et de la Recherche Medicale (INSERM), U900, Institut Curie, Mines ParisTech, Paris, France;
Sean V TavtigianOncological Sciences and.
Melissa C SoutheyGenetic Epidemiology Laboratory, Department of Pathology; msouthey@unimelb.edu.au david.goldgar@hsc.utah.edu.
David E GoldgarDermatology, Huntsman Cancer Institute, University of Utah School of Medicine; Huntsman Cancer Institute, University of Utah Health Sciences Center, Salt Lake City, Utah; msouthey@unimelb.edu.au david.goldgar@hsc.utah.edu.
Centre International de Recherche sur le Cancer · FRHuntsman Cancer Institute · USQIMR Berghofer Medical Research Institute · AUThe University of Texas MD Anderson Cancer Center · USCreighton University · USMelbourne Bioinformatics · AUUniversity of Melbourne · AUCancer Prevention Institute of California · USColumbia University · USÉcole Nationale Supérieure des Mines de Paris · FRFox Chase Cancer Center · USLeiden University Medical Center · NLMount Sinai Hospital · CAThe University of Texas at Austin · US

Funding

Tumor Evolution and Metastasis ProgramP30CA016672 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI Scott Kopetz · 1985 to 2026
$290.8M
UTAH REGIONAL CANCER CENTERP30CA042014 · NCI · UTAH STATE HIGHER EDUCATION SYSTEM--UNIVERSITY OF UTAH · PI Jared P Rutter · 1986 to 2026
$72.6M
Breast Cancer Family Registry CohortUM1CA164920 · NCI · CANCER PREVENTION INSTIT OF CALIFORNIA · PI ANDRULIS, IRENE, BUYS, SAUNDRA S · 2012 to 2017
$12.7M
THE AUSTRALIAN BREAST CANCER FAMILY REGISTRYU01CA069638 · NCI · UNIVERSITY OF MELBOURNE · PI HOPPER, JOHN L · 1995 to 2010
$6.6M
COMMON AND RARE SEQUENCE VARIANTS IN BREAST CANCER RISKR01CA121245 · NCI · UNIVERSITY OF UTAH · PI TAVTIGIAN, SEAN VAHRAM · 2007 to 2021
$4.9M
A comprehensive approach to breast cancer susceptibility across the risk spectrumR01CA155767 · NCI · UNIVERSITY OF UTAH · PI GOLDGAR, DAVID E., SOUTHEY, MELISSA · 2011 to 2015
$2.2M
VAAST+: Tool for variant prioritization, risk assessment and disease-gene findingR01GM104390 · NIGMS · UNIVERSITY OF UTAH · PI JORDE, LYNN, YANDELL, MARK DOUGLAS · 2013 to 2017
$2.2M
CIHRNCI NIH HHS P30 CA016672NCI NIH HHS P30 CA042014NCI NIH HHS P30CA042014NCI NIH HHS R01 CA121245NCI NIH HHS R01CA121245NCI NIH HHS R01 CA155767NCI NIH HHS R01CA155767NCI NIH HHS U01 CA069638NCI NIH HHS UM1 CA164920NIGMS NIH HHS R01 GM104390World Health Organization 001
6 · The paper itself

Abstract

unlabelledApproximately half of the familial aggregation of breast cancer remains unexplained. A multiple-case breast cancer family exome-sequencing study identified three likely pathogenic mutations in RINT1 (NM_021930.4) not present in public sequencing databases: RINT1 c.343C>T (p.Q115X), c.1132_1134del (p.M378del), and c.1207G>T (p.D403Y). On the basis of this finding, a population-based case-control mutation-screening study was conducted that identified 29 carriers of rare (minor allele frequency < 0.5%), likely pathogenic variants: 23 in 1,313 early-onset breast cancer cases and six in 1,123 frequency-matched controls [OR, 3.24; 95% confidence interval (CI), 1.29-8.17; P = 0.013]. RINT1 mutation screening of probands from 798 multiple-case breast cancer families identified four additional carriers of rare genetic variants. Analysis of the incidence of first primary cancers in families of women carrying RINT1 mutations estimated that carriers were at increased risk of Lynch syndrome-spectrum cancers [standardized incidence ratio (SIR), 3.35; 95% CI, 1.7-6.0; P = 0.005], particularly for relatives diagnosed with cancer under the age of 60 years (SIR, 10.9; 95% CI, 4.7-21; P = 0.0003). SIGNIFICANCE: The work described in this study adds RINT1 to the growing list of genes in which rare sequence variants are associated with intermediate levels of breast cancer risk. Given that RINT1 is also associated with a spectrum of cancers with mismatch repair defects, these findings have clinical applications and raise interesting biological questions.

Indexed as

Breast NeoplasmsCase-Control StudiesCell Cycle ProteinsColorectal Neoplasms, Hereditary NonpolyposisExomeFemaleGenetic Predisposition to DiseaseGenetic VariationHigh-Throughput Nucleotide SequencingHumansMaleMutationPedigreeSequence Analysis, DNACell Cycle ProteinsRINT1 protein, human

Identifiers

PMID25050558
PMCPMC4234633
OpenAlexW2171887893

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.