Evidence map›Paper›PMID 25049419›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2014

Auxin transport sites are visualized in planta using fluorescent auxin analogs.

Ken-ichiro Hayashi, Shouichi Nakamura, Shiho Fukunaga, Takeshi Nishimura, Mark K Jenness, Angus S Murphy, Hiroyasu Motose, Hiroshi Nozaki, Masahiko Furutani, Takashi Aoyama

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
13.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 85 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Review
  5. A novel toolbox to record CLE peptide signaling.Frontiers in plant science · 2024
    Article
  6. Article
  7. Article
  8. Review
  9. Article
  10. Auxin Transporters-A Biochemical View.Cold Spring Harbor perspectives in biology · 2022
    Review
  11. Review
  12. Article
  13. Review
  14. Article
  15. Article
  16. Review
  17. Article
  18. Review
  19. Auxins and Cytokinins-The Role of Subcellular Organization on Homeostasis.International journal of molecular sciences · 2018
    Review
  20. What Has Been Seen Cannot Be Unseen-Detecting Auxin In Vivo.International journal of molecular sciences · 2017
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 6 institutions in 2 countries.

Ken-ichiro HayashiDepartment of Biochemistry, Okayama University of Science, Okayama 700-0005, Japan; hayashi@dbc.ous.ac.jp.
Shouichi NakamuraDepartment of Biochemistry, Okayama University of Science, Okayama 700-0005, Japan;
Shiho FukunagaDepartment of Biochemistry, Okayama University of Science, Okayama 700-0005, Japan;
Takeshi NishimuraDepartment of Biological Sciences, Tokyo Metropolitan University, Tokyo 192-0397, Japan;
Mark K JennessDepartment of Plant Science and Landscape Architecture, University of Maryland, College Park, MD 20742;
Angus S MurphyDepartment of Plant Science and Landscape Architecture, University of Maryland, College Park, MD 20742;
Hiroyasu MotoseDivision of Bioscience, Graduate School of Natural Science and Technology, Okayama University, Okayama 700-8530, Japan;
Hiroshi NozakiDepartment of Biochemistry, Okayama University of Science, Okayama 700-0005, Japan;
Masahiko FurutaniGraduate School of Biological Sciences, Nara Institute of Science and Technology, Nara 630-0192, Japan; and.
Takashi AoyamaInstitute for Chemical Research, Kyoto University, Kyoto 611-0011, Japan.
Okayama University of Science · JPUniversity of Maryland, College Park · USKyoto University · JPNara Institute of Science and Technology · JPOkayama University · JPTokyo Metropolitan University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The plant hormone auxin is a key morphogenetic signal that controls many aspects of plant growth and development. Cellular auxin levels are coordinately regulated by multiple processes, including auxin biosynthesis and the polar transport and metabolic pathways. The auxin concentration gradient determines plant organ positioning and growth responses to environmental cues. Auxin transport systems play crucial roles in the spatiotemporal regulation of the auxin gradient. This auxin gradient has been analyzed using SCF-type E3 ubiquitin-ligase complex-based auxin biosensors in synthetic auxin-responsive reporter lines. However, the contributions of auxin biosynthesis and metabolism to the auxin gradient have been largely elusive. Additionally, the available information on subcellular auxin localization is still limited. Here we designed fluorescently labeled auxin analogs that remain active for auxin transport but are inactive for auxin signaling and metabolism. Fluorescent auxin analogs enable the selective visualization of the distribution of auxin by the auxin transport system. Together with auxin biosynthesis inhibitors and an auxin biosensor, these analogs indicated a substantial contribution of local auxin biosynthesis to the formation of auxin maxima at the root apex. Moreover, fluorescent auxin analogs mainly localized to the endoplasmic reticulum in cultured cells and roots, implying the presence of a subcellular auxin gradient in the cells. Our work not only provides a useful tool for the plant chemical biology field but also demonstrates a new strategy for imaging the distribution of small-molecule hormones.

Indexed as

ArabidopsisBiological TransportFluorescenceFluorescent DyesIndoleacetic AcidsMeristemPlant RootsSignal TransductionSubcellular FractionsFluorescent DyesIndoleacetic Acidsauxin transportersubcellular localization

Identifiers

PMID25049419
PMCPMC4128153
OpenAlexW2057954729

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.