Evidence map›Paper›PMID 25049418›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2014

Sulfenome mining in Arabidopsis thaliana.

Cezary Waszczak, Salma Akter, Dominique Eeckhout, Geert Persiau, Khadija Wahni, Nandita Bodra, Inge Van Molle, Barbara De Smet, Didier Vertommen, Kris Gevaert and 4 more

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 77 papers.

0numbers the graph read from it
0cells of the map it votes in
77citing papers in PubMed
6.5field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

77 citing papers in PubMed, 178 citations in OpenAlex.

  1. Emerging roles of glutaredoxins in plant metabolism.Journal of experimental botany · 2026
    Review
  2. Article
  3. Article
  4. Review
  5. Redox regulation of meristem quiescence: outside/in.Journal of experimental botany · 2024
    Review
  6. Review
  7. Article
  8. Article
  9. Regulation of V-ATPase by Jasmonic Acid: Possible Role of Persulfidation.International journal of molecular sciences · 2023
    Article
  10. Article
  11. Article
  12. HPlant, cell & environment · 2023
    Review
  13. Article
  14. Article
  15. Article
  16. Review
  17. Review
  18. Review
  19. Hydrogen peroxide-induced stress acclimation in plants.Cellular and molecular life sciences : CMLS · 2022
    Review
  20. Article

17 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 5 institutions in 1 country.

Cezary WaszczakDepartment of Plant Systems Biology, VIB, 9052 Ghent, Belgium;Department of Plant Biotechnology and Bioinformatics, Ghent University, 9052 Ghent, Belgium;Structural Biology Research Center, VIB, 1050 Brussels, Belgium;Brussels Center for Redox Biology, 1050 Brussels, Belgium;Structural Biology Brussels Laboratory, Vrije Universiteit Brussel, 1050 Brussels, Belgium;
Salma AkterDepartment of Plant Systems Biology, VIB, 9052 Ghent, Belgium;Department of Plant Biotechnology and Bioinformatics, Ghent University, 9052 Ghent, Belgium;Structural Biology Research Center, VIB, 1050 Brussels, Belgium;Brussels Center for Redox Biology, 1050 Brussels, Belgium;Structural Biology Brussels Laboratory, Vrije Universiteit Brussel, 1050 Brussels, Belgium;Department of Fisheries, Faculty of Biological Sciences, University of Dhaka, 1000 Dhaka, Bangladesh;
Dominique EeckhoutDepartment of Plant Systems Biology, VIB, 9052 Ghent, Belgium;Department of Plant Biotechnology and Bioinformatics, Ghent University, 9052 Ghent, Belgium;
Geert PersiauDepartment of Plant Systems Biology, VIB, 9052 Ghent, Belgium;Department of Plant Biotechnology and Bioinformatics, Ghent University, 9052 Ghent, Belgium;
Khadija WahniStructural Biology Research Center, VIB, 1050 Brussels, Belgium;Brussels Center for Redox Biology, 1050 Brussels, Belgium;Structural Biology Brussels Laboratory, Vrije Universiteit Brussel, 1050 Brussels, Belgium;
Nandita BodraDepartment of Plant Systems Biology, VIB, 9052 Ghent, Belgium;Department of Plant Biotechnology and Bioinformatics, Ghent University, 9052 Ghent, Belgium;Structural Biology Research Center, VIB, 1050 Brussels, Belgium;Brussels Center for Redox Biology, 1050 Brussels, Belgium;Structural Biology Brussels Laboratory, Vrije Universiteit Brussel, 1050 Brussels, Belgium;
Inge Van MolleStructural Biology Research Center, VIB, 1050 Brussels, Belgium;Brussels Center for Redox Biology, 1050 Brussels, Belgium;Structural Biology Brussels Laboratory, Vrije Universiteit Brussel, 1050 Brussels, Belgium;
Barbara De SmetDepartment of Plant Systems Biology, VIB, 9052 Ghent, Belgium;Department of Plant Biotechnology and Bioinformatics, Ghent University, 9052 Ghent, Belgium;Structural Biology Research Center, VIB, 1050 Brussels, Belgium;Brussels Center for Redox Biology, 1050 Brussels, Belgium;Structural Biology Brussels Laboratory, Vrije Universiteit Brussel, 1050 Brussels, Belgium;
Didier Vertommende Duve Institute, Université Catholique de Louvain, 1200 Brussels, Belgium;
Kris GevaertDepartment of Medical Protein Research, VIB, 9000 Ghent, Belgium; andDepartment of Biochemistry, Ghent University, 9000 Gent, Belgium.
Geert De JaegerDepartment of Plant Systems Biology, VIB, 9052 Ghent, Belgium;Department of Plant Biotechnology and Bioinformatics, Ghent University, 9052 Ghent, Belgium;
Marc Van MontaguDepartment of Plant Systems Biology, VIB, 9052 Ghent, Belgium;Department of Plant Biotechnology and Bioinformatics, Ghent University, 9052 Ghent, Belgium; marc.vanmontagu@ugent.be joris.messens@vib-vub.be frank.vanbreusegem@psb.vib-ugent.be.
Joris MessensStructural Biology Research Center, VIB, 1050 Brussels, Belgium;Brussels Center for Redox Biology, 1050 Brussels, Belgium;Structural Biology Brussels Laboratory, Vrije Universiteit Brussel, 1050 Brussels, Belgium; marc.vanmontagu@ugent.be joris.messens@vib-vub.be frank.vanbreusegem@psb.vib-ugent.be.
Frank Van BreusegemDepartment of Plant Systems Biology, VIB, 9052 Ghent, Belgium;Department of Plant Biotechnology and Bioinformatics, Ghent University, 9052 Ghent, Belgium; marc.vanmontagu@ugent.be joris.messens@vib-vub.be frank.vanbreusegem@psb.vib-ugent.be.
VIB-UGent Center for Plant Systems Biology · BEVIB-VUB Center for Structural Biology · BEGhent University · BEde Duve Institute · BEVrije Universiteit Brussel · BE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Reactive oxygen species (ROS) have been shown to be potent signaling molecules. Today, oxidation of cysteine residues is a well-recognized posttranslational protein modification, but the signaling processes steered by such oxidations are poorly understood. To gain insight into the cysteine thiol-dependent ROS signaling in Arabidopsis thaliana, we identified the hydrogen peroxide (H2O2)-dependent sulfenome: that is, proteins with at least one cysteine thiol oxidized to a sulfenic acid. By means of a genetic construct consisting of a fusion between the C-terminal domain of the yeast (Saccharomyces cerevisiae) AP-1-like (YAP1) transcription factor and a tandem affinity purification tag, we detected ∼ 100 sulfenylated proteins in Arabidopsis cell suspensions exposed to H2O2 stress. The in vivo YAP1-based trapping of sulfenylated proteins was validated by a targeted in vitro analysis of dehydroascorbate reductase2 (DHAR2). In DHAR2, the active site nucleophilic cysteine is regulated through a sulfenic acid-dependent switch, leading to S-glutathionylation, a protein modification that protects the protein against oxidative damage.

Indexed as

MetabolomeArabidopsisArabidopsis ProteinsCysteineGlutathioneHydrogen PeroxideKineticsModels, BiologicalMultiprotein ComplexesOxidation-ReductionOxidative StressProtein BindingProteolysisRecombinant Fusion ProteinsSignal TransductionSulfenic AcidsArabidopsis ProteinsCysteineGlutathioneHydrogen PeroxideMultiprotein ComplexesRecombinant Fusion ProteinsSulfenic Acidscysteine oxidationoxidative stressredox regulation

Identifiers

PMID25049418
PMCPMC4128149
OpenAlexW2022907449

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.