Evidence map›Paper›PMID 25049411›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2014

An obligately aerobic soil bacterium activates fermentative hydrogen production to survive reductive stress during hypoxia.

Michael Berney, Chris Greening, Ralf Conrad, William R Jacobs, Gregory M Cook

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 76 papers.

0numbers the graph read from it
0cells of the map it votes in
76citing papers in PubMed
8.7field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

76 citing papers in PubMed, 157 citations in OpenAlex.

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16 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 3 countries.

Michael BerneyDepartment of Microbiology and Immunology, University of Otago, Dunedin 9054, New Zealand;Department of Microbiology and Immunology and michael.berney@einstein.yu.edu chrisgreening1987@gmail.com.
Chris GreeningDepartment of Microbiology and Immunology, University of Otago, Dunedin 9054, New Zealand;Max Planck Institute for Terrestrial Microbiology, 35043 Marburg, Germany michael.berney@einstein.yu.edu chrisgreening1987@gmail.com.
Ralf ConradMax Planck Institute for Terrestrial Microbiology, 35043 Marburg, Germany.
William R JacobsDepartment of Microbiology and Immunology andHoward Hughes Medical Institute, Albert Einstein College of Medicine, Bronx, NY 10461; and.
Gregory M CookDepartment of Microbiology and Immunology, University of Otago, Dunedin 9054, New Zealand;
University of Otago · NZAlbert Einstein College of Medicine · USMax Planck Institute for Terrestrial Microbiology · DE

Funding

Molecular Genetic Analysis of Mycobacterium TuberculosisR37AI026170 · NIAID · ALBERT EINSTEIN COL OF MED YESHIVA UNIV · PI WILLIAM Robert JACOBS · 2004 to 2026
$7.7M
MOLECULAR GENETIC ANALYSIS OF MYCOBACTERIUM TUBERCULOSISR01AI026170 · NIAID · YESHIVA UNIVERSITY · PI JACOBS, WILLIAM ROBERT · 1989 to 2022
$7.1M
Drugs targeting persistent Mycobacterium TuberculosisR01AI097548 · NIAID · ALBERT EINSTEIN COLLEGE OF MEDICINE, INC · PI JACOBS, WILLIAM ROBERT · 2013 to 2016
$2.6M
MOLECULAR GENETIC ANALYSIS OF MYCOBACTERIUM TUBERCULOSISR22AI026170 · NIAID · YESHIVA UNIVERSITY · PI JACOBS, WILLIAM ROBERT · 1989 to 1991
–
Howard Hughes Medical InstituteNIAID NIH HHS AI26170NIAID NIH HHS R01 AI026170NIAID NIH HHS R01 AI097548NIAID NIH HHS R01AI097548-01A1NIAID NIH HHS R37 AI026170
6 · The paper itself

Abstract

Oxygen availability is a major factor and evolutionary force determining the metabolic strategy of bacteria colonizing an environmental niche. In the soil, conditions can switch rapidly between oxia and anoxia, forcing soil bacteria to remodel their energy metabolism accordingly. Mycobacterium is a dominant genus in the soil, and all its species are obligate aerobes. Here we show that an obligate aerobe, the soil actinomycete Mycobacterium smegmatis, adopts an anaerobe-type strategy by activating fermentative hydrogen production to adapt to hypoxia. This process is controlled by the two-component system DosR-DosS/DosT, an oxygen and redox sensor that is well conserved in mycobacteria. We show that DosR tightly regulates the two [NiFe]-hydrogenases: Hyd3 (MSMEG_3931-3928) and Hyd2 (MSMEG_2719-2718). Using genetic manipulation and high-sensitivity GC, we demonstrate that Hyd3 facilitates the evolution of H2 when oxygen is depleted. Combined activity of Hyd2 and Hyd3 was necessary to maintain an optimal NAD(+)/NADH ratio and enhanced adaptation to and survival of hypoxia. We demonstrate that fermentatively-produced hydrogen can be recycled when fumarate or oxygen become available, suggesting Mycobacterium smegmatis can switch between fermentation, anaerobic respiration, and aerobic respiration. Hydrogen metabolism enables this obligate aerobe to rapidly meet its energetic needs when switching between microoxic and anoxic conditions and provides a competitive advantage in low oxygen environments.

Indexed as

FermentationSoil MicrobiologyStress, PhysiologicalAerobiosisAnaerobiosisBacteria, AnaerobicBacterial ProteinsBase SequenceElectronsGene Expression Regulation, BacterialHomeostasisHydrogenHydrogenaseIntracellular SpaceMicrobial ViabilityModels, BiologicalBacterial ProteinsHydrogenHydrogenasenickel-iron hydrogenaseOxygen

Identifiers

PMID25049411
PMCPMC4128101
OpenAlexW2088139692

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.