Evidence map›Paper›PMID 25049391›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2014

Method for identifying phosphorylated substrates of specific cyclin/cyclin-dependent kinase complexes.

Yinyin Li, Frederick R Cross, Brian T Chait

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
1.9field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 32 citations in OpenAlex.

  1. Article
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  5. Article
  6. Stable Isotope Phosphate Labelling of Diverse Metabolites is Enabled by a Family ofAngewandte Chemie (Weinheim an der Bergstrasse, Germany) · 2022
    Article
  7. Stable Isotope Phosphate Labelling of Diverse Metabolites is Enabled by a Family ofAngewandte Chemie (International ed. in English) · 2022
    Article
  8. Article
  9. Article
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  12. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Yinyin LiLaboratory of Mass Spectrometry and Gaseous Ion Chemistry and.
Frederick R CrossLaboratory of Cell Cycle Genetics, The Rockefeller University, New York, NY 10065.
Brian T ChaitLaboratory of Mass Spectrometry and Gaseous Ion Chemistry and chait@rockefeller.edu.
Rockefeller University · US

Funding

TR&D Project 4. The Imaging Stage: Multiscale Spatiotemporal Modeling of Macromolecular Systems in Cellular NeighborhoodsP41GM109824 · NIGMS · ROCKEFELLER UNIVERSITY · PI ROUT, MICHAEL P · 2014 to 2023
$18.8M
National Resource for Mass Spectrom of Biological MacromoleculesP41GM103314 · NIGMS · ROCKEFELLER UNIVERSITY · PI CHAIT, BRIAN T · 2012 to 2017
$9.9M
SPECIFICITY OF CYCLIN FUNCTION AT CELL CYCLE INITIATIONR01GM047238 · NIGMS · ROCKEFELLER UNIVERSITY · PI CROSS, FREDERICK R. · 1993 to 2010
$3.4M
Sources and Consequences of noise in cell cycle regulationR01GM078153 · NIGMS · ROCKEFELLER UNIVERSITY · PI CROSS, FREDERICK R. · 2006 to 2019
$3.3M
Protein Sequencing Tools for Biological TherapeuticsR42GM103362 · NIGMS · PROTEIN METRICS, LLC · PI FENYO, DAVID · 2015 to 2016
$989k
Protein Sequencing Tools for Biological TherapeuticsR41GM103362 · NIGMS · PROTEIN METRICS, LLC · PI FENYO, DAVID · 2012 to 2014
$686k
NIGMS NIH HHS 2P41GM103314NIGMS NIH HHS GM103362NIGMS NIH HHS GM47238NIGMS NIH HHS GM78153NIGMS NIH HHS P41 GM103314NIGMS NIH HHS P41 GM109824NIGMS NIH HHS R01 GM047238NIGMS NIH HHS R01 GM078153NIGMS NIH HHS R41 GM103362NIGMS NIH HHS R42 GM103362
6 · The paper itself

Abstract

In eukaryotes, cell cycle progression is controlled by cyclin/cyclin-dependent kinase (CDK) pairs. To better understand the details of this process, it is necessary to dissect the CDK's substrate pool in a cyclin- and cell cycle stage-specific way. Here, we report a mass spectrometry-based method that couples rapid isolation of native kinase-substrate complexes to on-bead phosphorylation with heavy-labeled ATP (ATP-γ-(18)O4). This combined in vivo/in vitro method was developed for identifying cyclin/CDK substrates together with their sites of phosphorylation. We used the method to identify Clb5 (S-cyclin)/Cdc28 and Cln2 (G1/S-cyclin)/Cdc28 substrates during S phase in Saccharomyces cerevisiae (Cdc28 is the master CDK in budding yeast). During the work, we discovered that Clb5/Cdc28 specifically phosphorylates S429 in the disordered tail of Cdc14, an essential phosphatase antagonist of Cdc28. This phosphorylation severely decreases the activity of Cdc14, providing a means for modulating the balance of CDK and phosphatase activity.

Indexed as

Cyclin-Dependent KinasesCyclinsEnzyme AssaysMass SpectrometryMutationPhosphoprotein PhosphatasesPhosphorylationPhosphoserineRecombinant ProteinsSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsS PhaseSubstrate SpecificityCyclin-Dependent KinasesCyclinsPhosphoprotein PhosphatasesPhosphoserineRecombinant ProteinsSaccharomyces cerevisiae Proteinskinase substrate identificationNESKA

Identifiers

PMID25049391
PMCPMC4128132
OpenAlexW2099846349

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.