Evidence map›Paper›PMID 25049381›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2014

Sequence-resolved free energy profiles of stress-bearing vimentin intermediate filaments.

Beatrice Ramm, Johannes Stigler, Michael Hinczewski, D Thirumalai, Harald Herrmann, Günther Woehlke, Matthias Rief

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Article
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  4. Review
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  8. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Beatrice RammPhysik Department E22, Technische Universität München, 85748 Garching, Germany;
Johannes StiglerPhysik Department E22, Technische Universität München, 85748 Garching, Germany;
Michael HinczewskiInstitute for Physical Science and Technology, University of Maryland, College Park, MD 20742;
D ThirumalaiInstitute for Physical Science and Technology, University of Maryland, College Park, MD 20742;
Harald HerrmannFunctional Architecture of the Cell, German Cancer Research Center, 69120 Heidelberg, Germany; and.
Günther WoehlkePhysik Department E22, Technische Universität München, 85748 Garching, Germany;
Matthias RiefPhysik Department E22, Technische Universität München, 85748 Garching, Germany;Nanosystems Initiative Munich, 80799 Munich, Germany mrief@ph.tum.de.

Funding

Computational Approaches to Single Molecule Force SpectroscopyR01GM089685 · NIGMS · UNIV OF MARYLAND, COLLEGE PARK · PI THIRUMALAI, DEVARAJAN · 2010 to 2020
$2.9M
NIGMS NIH HHS GM 089685NIGMS NIH HHS R01 GM089685
6 · The paper itself

Abstract

Intermediate filaments (IFs) are key to the mechanical strength of metazoan cells. Their basic building blocks are dimeric coiled coils mediating hierarchical assembly of the full-length filaments. Here we use single-molecule force spectroscopy by optical tweezers to assess the folding and stability of coil 2B of the model IF protein vimentin. The coiled coil was unzipped from its N and C termini. When pulling from the C terminus, we observed that the coiled coil was resistant to force owing to the high stability of the C-terminal region. Pulling from the N terminus revealed that the N-terminal half is considerably less stable. The mechanical pulling assay is a unique tool to study and control seed formation and structure propagation of the coiled coil. We then used rigorous theory-based deconvolution for a model-free extraction of the energy landscape and local stability profiles. The data obtained from the two distinct pulling directions complement each other and reveal a tripartite stability of the coiled coil: a labile N-terminal half, followed by a medium stability section and a highly stable region at the far C-terminal end. The different stability regions provide important insight into the mechanics of IF assembly.

Indexed as

Stress, MechanicalAmino Acid SequenceIntermediate FilamentsModels, MolecularMolecular Sequence DataProtein FoldingProtein Structure, SecondaryThermodynamicsVimentinVimentinBrownian dynamics simulationprotein foldingtrigger sequence

Identifiers

PMID25049381
PMCPMC4128112

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.