ArticlePlant physiology2014
Dissection of the control of anion homeostasis by associative transcriptomics in Brassica napus.
Article in Plant physiology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.
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Who cites it
20 citing papers in PubMed, 32 citations in OpenAlex.
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- Transcriptome-referenced association study provides insights into the regulation of oil and fatty acid biosynthesis in Torreya grandis kernel.Journal of advanced research · 2024Article
- Natural Variation inPlants (Basel, Switzerland) · 2022Article
- Nitrogen Assimilation Related Genes inPlants (Basel, Switzerland) · 2021Article
- Using single-plant-omics in the field to link maize genes to functions and phenotypes.Molecular systems biology · 2020Article
- Genetic dissection of the shoot and root ionomes of Brassica napus grown with contrasting phosphate supplies.Annals of botany · 2020Article
- AFrontiers in plant science · 2020Article
- Root-specific camalexin biosynthesis controls the plant growth-promoting effects of multiple bacterial strains.Proceedings of the National Academy of Sciences of the United States of America · 2019Article
- Analysing the genetic architecture of clubroot resistance variation inMolecular breeding : new strategies in plant improvement · 2019Article
- Species-Wide Variation in Shoot Nitrate Concentration, and Genetic Loci Controlling Nitrate, Phosphorus and Potassium Accumulation inFrontiers in plant science · 2018Article
- Genomic and Transcriptomic Analysis Identified Gene Clusters and Candidate Genes for Oil Content in Peanut (Arachis hypogaea L.).Plant molecular biology reporter · 2018Article
- Dissecting the complex regulation of lodging resistance inMolecular breeding : new strategies in plant improvement · 2018Article
- Root Cell-Specific Regulators of Phosphate-Dependent Growth.Plant physiology · 2017Article
- Identification of Candidate Genes for Calcium and Magnesium Accumulation inFrontiers in plant science · 2017Article
- Root nodule symbiosis in Lotus japonicus drives the establishment of distinctive rhizosphere, root, and nodule bacterial communities.Proceedings of the National Academy of Sciences of the United States of America · 2016Article
- Root morphology and seed and leaf ionomic traits in a Brassica napus L. diversity panel show wide phenotypic variation and are characteristic of crop habit.BMC plant biology · 2016Article
- Hormonal control of sulfate uptake and assimilation.Plant molecular biology · 2016Review
- Molecular markers for tolerance of European ash (Fraxinus excelsior) to dieback disease identified using Associative Transcriptomics.Scientific reports · 2016Article
- Molecular mechanisms of regulation of sulfate assimilation: first steps on a long road.Frontiers in plant science · 2014Review
Corrections and comments
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Authors and funding
5 authors at 1 institution in 1 country.
Funding
Abstract
To assess the variation in nutrient homeostasis in oilseed rape and to identify the genes responsible for this variation, we determined foliar anion levels in a diversity panel of Brassica napus accessions, 84 of which had been genotyped previously using messenger RNA sequencing. We applied associative transcriptomics to identify sequence polymorphisms linked to variation in nitrate, phosphate, or sulfate in these accessions. The analysis identified several hundred significant associations for each anion. Using functional annotation of Arabidopsis (Arabidopsis thaliana) homologs and available microarray data, we identified 60 candidate genes for controlling variation in the anion contents. To verify that these genes function in the control of nutrient homeostasis, we obtained Arabidopsis transfer DNA insertion lines for these candidates and tested them for the accumulation of nitrate, phosphate, and sulfate. Fourteen lines differed significantly in levels of the corresponding anions. Several of these genes have been shown previously to affect the accumulation of the corresponding anions in Arabidopsis mutants. These results thus confirm the power of associative transcriptomics in dissection of the genetic control of complex traits and present a set of candidate genes for use in the improvement of efficiency of B. napus mineral nutrition.
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.