Evidence map›Paper›PMID 25048577›Full record

ArticleAnnals of clinical microbiology and antimicrobials2014

Molecular characterisation and control of Acinetobacter baumannii isolates resistant to multi-drugs emerging in inter-intensive care units.

Ayşe Ertürk, Ayşegül Çopur Çiçek, Aziz Gümüş, Erkan Cüre, Ahmet Şen, Aysel Kurt, Alper Karagöz, Nebahat Aydoğan, Cemal Sandallı, Rıza Durmaz

Abstract read
In one paragraph

Article in Annals of clinical microbiology and antimicrobials, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Article
  2. Article
  3. Genome sequences ofMicrobiology resource announcements · 2023
    Article
  4. Does Emerging Carbapenem Resistance inInfectious disease reports · 2023
    Review
  5. Molecular epidemiology of carbapenem-resistantNorthern clinics of Istanbul · 2023
    Review
  6. Article
  7. Article
  8. Dual Lower Respiratory Tract Infection byJournal of clinical and diagnostic research : JCDR · 2016
    Article
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Ayşe ErtürkDepartment of Infectious Diseases, School of Medicine, Recep Tayyip Erdogan University, Rize, Turkey. ayseace25@hotmail.com.
Ayşegül Çopur ÇiçekDepartment of Medical Microbiology, Faculty of Medicine, Recep Tayyip Erdogan University, Rize, Turkey. draysegulcicek@yahoo.com.
Aziz GümüşDepartment of Pulmonary Medicine, Faculty of Medicine, Recep Tayyip Erdogan University, Rize, Turkey. azizgumus@gmail.com.
Erkan CüreDepartment of Internal Medicine, Faculty of Medicine, Recep Tayyip Erdogan University, Rize, Turkey. erkancure@yahoo.com.
Ahmet ŞenDepartment of Anesthesiology And Reanimation, Faculty of Medicine, Recep Tayyip Erdogan University, Rize, Turkey. ahmetsenau@gmail.com.
Aysel KurtDepartment of Thoracic Surgery, Faculty of Medicine, Recep Tayyip Erdogan University, Rize, Turkey. aysel.kurt@erdogan.edu.tr.
Alper KaragözDepartment of Microbiology Reference Laboratories, Turkey Public Health Institute, Molecular Microbiology Research and Application Laboratory, Rize, Turkey. alper.karagoz82@gmail.com.
Nebahat AydoğanDepartment of Medical Microbiology, Faculty of Medicine, Recep Tayyip Erdogan University, Rize, Turkey. nebahat.86@hotmail.com.
Cemal SandallıDepartment of Biology, Faculty of Arts & Sciences, Recep Tayyip Erdogan University, Rize, Turkey. csandalli@yahoo.com.
Rıza DurmazDepartment of Clinical Microbiology, Medical Faculty, Yildirim Beyazit University, Ankara, Turkey. rizadurmaz@ymail.com.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundA nosocomial outbreak of Acinetobacter baumannii (AB) infections occurred among intensive care units (ICU) (surgery, medical, cardiovascular surgery, coronary unit) of Recep Tayyip Erdogan University Medical School (Rize, Turkey) between January 2011 and May 2012. The identification of isolates and clonal relation among them were investigated by molecular techniques.

methodsA total of 109 AB isolates were obtained from 64 clinical materials from 54 ICU patients and 3 from the hands of healthcare workers (HCWs) of 42 environmental samples. The isolates were identified by 16S rDNA sequencing and OXA- specific PCR. The clonal relation between isolates was investigated by PFGE methods using ApaI restriction enzyme.

resultsAll isolates were determined as AB by 16S rDNA sequencing and OXA-spesific PCR. While the blaOXA-51-like gene was amplified in all isolates, the blaOXA-23-like gene was amplified from 103 isolates. The PFGE pattern generated 9 pulsotypes and showed that the isolates from patients, HCWs, and the environment were genetically related. In 7 of these pulsotypes, there were 107 strains (98%) showing similar PFGE profiles that cannot be distinguished from each other, ranging from 2 to 53. The remaining 2 pulsotypes were comprised of strains closely associated with the main cluster. Two major groups were discovered with similarity coefficient of 85% and above. The first group consisted of 97 strains that are similar to each other at 92.7% rate, and the second group consisted of 12 strains that are 100% identical.

conclusionsThe common utilization of the blood gas device among ICU was the reason for the contamination. AB strains can remain stable for a long period of time, although due to the disinfection procedures applied in hospitals, there is a small chance that the same clone might reappear and cause another epidemic. For that reason, the resistance profiles of the strains must be continuously followed with amplification-based methods, and these methods should be used to support the PFGE method in the short term.

Indexed as

Disease OutbreaksDrug Resistance, Multiple, BacterialAcinetobacter baumanniiAcinetobacter Infectionsbeta-LactamasesCarrier StateCluster AnalysisCross InfectionDNA, BacterialDNA, RibosomalElectrophoresis, Gel, Pulsed-FieldEnvironmental MicrobiologyGenotypeHumansIntensive Care UnitsMolecular Epidemiologybeta-LactamasesDNA, BacterialDNA, RibosomalRNA, Ribosomal, 16S

Identifiers

PMID25048577
PMCPMC4378696

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.