Evidence map›Paper›PMID 25048369›Full record

ArticleMicrobial cell factories2014

The use of fosmid metagenomic libraries in preliminary screening for various biological activities.

Agnieszka Felczykowska, Aleksandra Dydecka, Małgorzata Bohdanowicz, Tomasz Gąsior, Marek Soboň, Justyna Kobos, Sylwia Bloch, Bożena Nejman-Faleńczyk, Grzegorz Węgrzyn

Open access · goldAbstract read
In one paragraph

Article in Microbial cell factories, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.7field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 16 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 2 countries.

Agnieszka FelczykowskaDepartment of Molecular Biology, University of Gdańsk, Wita Stwosza 59, 80-308, Gdańsk, Poland. agnieszka.felczykowska@biol.ug.edu.pl.
Aleksandra DydeckaDepartment of Molecular Biology, University of Gdańsk, Wita Stwosza 59, 80-308, Gdańsk, Poland. ola.dydecka@wp.pl.
Małgorzata BohdanowiczDepartment of Molecular Biology, University of Gdańsk, Wita Stwosza 59, 80-308, Gdańsk, Poland. m_bohdanowicz@wp.pl.
Tomasz GąsiorDepartment of Molecular Biology, University of Gdańsk, Wita Stwosza 59, 80-308, Gdańsk, Poland. tomasz.gasior@biol.ug.edu.pl.
Marek SoboňDepartment of Molecular Biology, University of Gdańsk, Wita Stwosza 59, 80-308, Gdańsk, Poland. marek.sobon@gmail.com.
Justyna KobosInstitute of Oceanography, University of Gdansk, Al. Marszałka Piłsudskiego 46, 81-378, Gdynia, Poland. ocejl@ug.edu.pl.
Sylwia BlochDepartment of Molecular Biology, University of Gdańsk, Wita Stwosza 59, 80-308, Gdańsk, Poland. sylwia.bloch@biol.ug.edu.pl.
Bożena Nejman-FaleńczykDepartment of Molecular Biology, University of Gdańsk, Wita Stwosza 59, 80-308, Gdańsk, Poland. bozena.nejman@biol.ug.edu.pl.
Grzegorz WęgrzynDepartment of Molecular Biology, University of Gdańsk, Wita Stwosza 59, 80-308, Gdańsk, Poland. grzegorz.wegrzyn@biol.ug.edu.pl.
University of Gdańsk · PL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundIt is generally believed that there are many natural sources of as yet unknown bioactive compounds with a high biotechnological potential. However, the common method based on the use of cell extracts in the preliminary screening for particular molecules or activities is problematic as amounts of obtained compounds may be low, and such experiments are hardly reproducible. Therefore, the aim of this work was to test whether a novel strategy to search for previously unknown biological activities can be efficient. This strategy is based on construction of metagenomic libraries and employment of Escherichia coli strains as cell factories producing compounds of properties potentially useful in biotechnology.

resultsThree cyanobacterial metagenomic libraries were constructed in the fosmid system. The libraries were screened for various biological activities. Extracts from selected E. coli clones bearing constructs with fragments of cyanobacterial genomes revealed antimicrobial or anticancer activities. Interestingly, stimulation of growth of host bacteria bearing particular plasmids with certain cyanobacterial genes was detected, suggesting a potential possibility for improvement of E. coli cultivation during biotechnological production. The most interesting plasmids were sequenced, and putative mechanisms of biological effects caused by cyanobacterial gene products are discussed.

conclusionsThe strategy of exploring cyanobacteria as sources of bioactive compounds, based on E. coli cell factories producing compounds due to expression of genes from metagenomic libraries, appears to be effective.

Indexed as

Gene LibraryGenetic VectorsMetagenomeMetagenomicsCyanobacteriaEscherichia coli

Identifiers

PMID25048369
PMCPMC4347599
OpenAlexW2121573977

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.