ArticlePloS one2014
Using genotyping-by-sequencing (GBS) for genomic discovery in cultivated oat.
Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 78 papers.
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Who cites it
78 citing papers in PubMed.
- Effectiveness of low-density high-throughput marker platform and easy-to-measure traits for genomic prediction of biomass yield in oat (Avena sativa L.).The plant genome · 2026Article
- Global genomic population structure of wild and cultivated oat reveals signatures of chromosome rearrangements.Nature communications · 2025Article
- Exploration of the genetic diversity of Avena Fatua L. (wild oat) through genotyping-by-sequencing and SDS-PAGE.BMC plant biology · 2025Article
- Uncovering the genomic regions underlying grain iron and zinc content using genome-wide association mapping in finger millet.3 Biotech · 2024Article
- Utilizing Genomics to Characterize the Common Oat Gene Pool-The Story of More Than a Century of Polish Breeding.International journal of molecular sciences · 2023Article
- Genetic mapping of the powdery mildew resistance gene Pm7 on oat chromosome 5D.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2023Article
- Population structure analysis and genome-wide association study of a hexaploid oat landrace and cultivar collection.Frontiers in plant science · 2023Article
- Chromosomal Location ofGenes · 2022Article
- The Use of DArTseq Technology to Identify Markers Linked to Genes Responsible for Seed Germination and Seed Vigor in Maize.International journal of molecular sciences · 2022Article
- OMICS in Fodder Crops: Applications, Challenges, and Prospects.Current issues in molecular biology · 2022Review
- Genome analysis in Avena sativa reveals hidden breeding barriers and opportunities for oat improvement.Communications biology · 2022Article
- Whole-genome resequencing of Sorghum bicolor and S. bicolor × S. halepense lines provides new insights for improving plant agroecological characteristics.Scientific reports · 2022Article
- High-resolution quantitative trait locus mapping for rice grain quality traits using genotyping by sequencing.Frontiers in plant science · 2022Article
- SilicoDArT and SNP markers for genetic diversity and population structure analysis of Trema orientalis; a fodder species.PloS one · 2022Article
- Novel GBS-Based SNP Markers for Finger Millet and Their Use in Genetic Diversity Analyses.Frontiers in genetics · 2022Article
- Development of high-resolution multiple-SNP arrays for genetic analyses and molecular breeding through genotyping by target sequencing and liquid chip.Plant communications · 2021Article
- Genomic prediction and training set optimization in a structured Mediterranean oat population.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2021Article
- Population genomics of Mediterranean oat (A. sativa) reveals high genetic diversity and three loci for heading date.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2021Article
- Genetic variation and population structure in China summer maize germplasm.Scientific reports · 2021Article
- Genome-Wide Association Study Reveals the Genetic Architecture of Seed Vigor in Oats.G3 (Bethesda, Md.) · 2020Article
18 more citing papers are in PubMed but not listed here.
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Authors and funding
5 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Advances in next-generation sequencing offer high-throughput and cost-effective genotyping alternatives, including genotyping-by-sequencing (GBS). Results have shown that this methodology is efficient for genotyping a variety of species, including those with complex genomes. To assess the utility of GBS in cultivated hexaploid oat (Avena sativa L.), seven bi-parental mapping populations and diverse inbred lines from breeding programs around the world were studied. We examined technical factors that influence GBS SNP calls, established a workflow that combines two bioinformatics pipelines for GBS SNP calling, and provided a nomenclature for oat GBS loci. The high-throughput GBS system enabled us to place 45,117 loci on an oat consensus map, thus establishing a positional reference for further genomic studies. Using the diversity lines, we estimated that a minimum density of one marker per 2 to 2.8 cM would be required for genome-wide association studies (GWAS), and GBS markers met this density requirement in most chromosome regions. We also demonstrated the utility of GBS in additional diagnostic applications related to oat breeding. We conclude that GBS is a powerful and useful approach, which will have many additional applications in oat breeding and genomic studies.
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