Evidence map›Paper›PMID 25045132›Full record

ArticleChembiochem : a European journal of chemical biology2014

Bioorthogonal fluorescent labeling of functional G-protein-coupled receptors.

He Tian, Saranga Naganathan, Manija A Kazmi, Thue W Schwartz, Thomas P Sakmar, Thomas Huber

Open access · greenAbstract read
In one paragraph

Article in Chembiochem : a European journal of chemical biology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
3.4field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 48 citations in OpenAlex.

  1. Review
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  11. Low- q Bicelles Are Mixed Micelles.The journal of physical chemistry letters · 2018
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  16. A simple method for enhancing the bioorthogonality of cyclooctyne reagent.Chemical communications (Cambridge, England) · 2016
    Article
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  19. Ghrelin receptor conformational dynamics regulate the transition from a preassembled to an active receptor:Gq complex.Proceedings of the National Academy of Sciences of the United States of America · 2015
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

He TianLaboratory of Chemical Biology and Signal Transduction, The Rockefeller University, 1230 York Avenue, New York, NY 10065 (USA).
Saranga Naganathan
Manija A Kazmi
Thue W Schwartz
Thomas P Sakmar
Thomas Huber
Rockefeller University · USUniversity of Copenhagen · DK

Funding

MEMBRANE BASIS OF VISUAL EXCITATIONR01EY012049 · NEI · UNIVERSITY OF ARIZONA · PI BROWN, MICHAEL F · 1998 to 2012
$3.3M
NEI NIH HHS R01 EY012049
6 · The paper itself

Abstract

Novel methods are required for site-specific, quantitative fluorescent labeling of G-protein-coupled receptors (GPCRs) and other difficult-to-express membrane proteins. Ideally, fluorescent probes should perturb the native structure and function as little as possible. We evaluated bioorthogonal reactions to label genetically encoded p-acetyl-L-phenylalanine (AcF) or p-azido-L-phenylalanine (azF) residues in receptors heterologously expressed in mammalian cells. We found that keto-selective reagents were not truly bioorthogonal, possibly owing to post-translational protein oxidation reactions. In contrast, the strain-promoted [3+2] azide-alkyne cycloaddition (SpAAC) with dibenzocyclooctyne (DIBO) reagents yielded stoichiometric conjugates with azF-rhodopsin while undergoing negligible background reactions. As one application of this technique, we used Alexa488-rhodopsin to measure the kinetics of ligand uptake and release in membrane-mimetic bicelles using a novel fluorescence-quenching assay.

Indexed as

FluorescenceStaining and LabelingFluorescent DyesGenetic CodeKineticsModels, MolecularReceptors, G-Protein-CoupledSpectrometry, FluorescenceFluorescent DyesReceptors, G-Protein-Coupledbioorthogonal labelingfluorescencenon-canonical amino acidsreceptorsrhodopsin

Identifiers

PMID25045132
PMCPMC4215543
OpenAlexW2042139736

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.