Evidence map›Paper›PMID 25044660›Full record

ArticleChembiochem : a European journal of chemical biology2014

Increasing the reaction rate of hydroxynitrile lyase from Hevea brasiliensis toward mandelonitrile by copying active site residues from an esterase that accepts aromatic esters.

Jan von Langermann, David M Nedrud, Romas J Kazlauskas

Abstract read
In one paragraph

Article in Chembiochem : a European journal of chemical biology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.9field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 17 citations in OpenAlex.

  1. Catalytic Promiscuity of Ancestral Esterases and Hydroxynitrile Lyases.Journal of the American Chemical Society · 2016
    Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 2 countries.

Jan von LangermannDepartment of Biochemistry, Molecular Biology and Biophysics, Biotechnology Institute, University of Minnesota, 1479 Gortner Avenue, Saint Paul, MN 55108 (USA); Institute of Chemistry, University of Rostock, Albert-Einstein-Strasse 3A, 18059 Rostock (Germany).
David M Nedrud
Romas J Kazlauskas
University of Minnesota · US

Funding

Evolutionary Insights Into Enzyme MechanismsR01GM102205 · NIGMS · UNIVERSITY OF MINNESOTA · PI DEAN, ANTONY M., KAZLAUSKAS, ROMAS J · 2012 to 2015
$1.8M
NIGMS NIH HHS R01 GM102205PHS HHS 1R01M102205-01
6 · The paper itself

Abstract

The natural substrate of hydroxynitrile lyase from rubber tree (HbHNL, Hevea brasiliensis) is acetone cyanohydrin, but synthetic applications usually involve aromatic cyanohydrins such as mandelonitrile. To increase the activity of HbHNL toward this unnatural substrate, we replaced active site residues in HbHNL with the corresponding ones from esterase SABP2 (salicylic acid binding protein 2). Although this enzyme catalyzes a different reaction (hydrolysis of esters), its natural substrate (methyl salicylate) contains an aromatic ring. Three of the eleven single-amino-acid-substitution variants of HbHNL reacted more rapidly with mandelonitrile. The best was HbHNL-L121Y, with a kcat 4.2 times higher and high enantioselectivity. Site-saturation mutagenesis at position 121 identified three other improved variants. We hypothesize that the smaller active site orients the aromatic substrate more productively.

Indexed as

AcetonitrilesAldehyde-LyasesCatalysisCatalytic DomainEsterasesEstersHeveaHydrocarbons, AromaticModels, MolecularMutagenesis, Site-DirectedPlant ProteinsProtein UnfoldingStereoisomerismSubstrate SpecificityAcetonitrilesAldehyde-LyasesEsterasesEstersHydrocarbons, Aromaticmandelonitrilemandelonitrile lyasePlant ProteinsSABP2 protein, Nicotiana tabacumenzyme catalysisesteraseshydroxynitrile lyasepromiscuous activityprotein engineering

Identifiers

PMID25044660
PMCPMC4167783
OpenAlexW2016771591

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.