Evidence map›Paper›PMID 25044326›Full record

ArticleBirth defects research. Part A, Clinical and molecular teratology2014

Missing genetic risk in neural tube defects: can exome sequencing yield an insight?

Deidre R Krupp, Karen L Soldano, Melanie E Garrett, Heidi Cope, Allison E Ashley-Koch, Simon G Gregory

Open access · greenAbstract read
In one paragraph

Article in Birth defects research. Part A, Clinical and molecular teratology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.4field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 13 citations in OpenAlex.

  1. Article
  2. Association of deep phenotyping with diagnostic yield of prenatal exome sequencing for fetal brain abnormalities.Genetics in medicine : official journal of the American College of Medical Genetics · 2023
    Article
  3. Genes · 2022
    Article
  4. Comparative medicine · 2020
    Article
  5. Exome analysis in an Estonian multiplex family with neural tube defects-a case report.Child's nervous system : ChNS : official journal of the International Society for Pediatric Neurosurgery · 2017
    Article
  6. Review
  7. Spina bifida.Nature reviews. Disease primers · 2015
    Review
  8. Cerebral Abnormalities in Spina Bifida: A Neuropathological Study.Pediatric and developmental pathology : the official journal of the Society for Pediatric Pathology and the Paediatric Pathology Society
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Deidre R KruppDuke Molecular Physiology Institute, DUMC, 300 North Duke Street, Durham, NC, 27701.
Karen L Soldano
Melanie E Garrett
Heidi Cope
Allison E Ashley-Koch
Simon G Gregory
Duke University Hospital · USDuke Medical Center · USDuke University · US

Funding

The Hereditary Basis of Neural Tube DefectsR01NS039818 · NINDS · DUKE UNIVERSITY · PI ASHLEY-KOCH, ALLISON E · 1999 to 2008
$6.8M
NINDS NIH HHS R01 NS039818NINDS NIH HHS R01 NS039818-07
6 · The paper itself

Abstract

backgroundNeural tube defects (NTD) have a strong genetic component, with up to 70% of variance in human prevalence determined by heritable factors. Although the identification of causal DNA variants by sequencing candidate genes from functionally relevant pathways and model organisms has provided some success, alternative approaches are demanded.

methodsNext generation sequencing platforms are facilitating the production of massive amounts of sequencing data, primarily from the protein coding regions of the genome, at a faster rate and cheaper cost than has previously been possible. These platforms are permitting the identification of variants (de novo, rare, and common) that are drivers of NYTD etiology, and the cost of the approach allows for the screening of increased numbers of affected and unaffected individuals from NTD families and in simplex cases.

conclusionThe next generation sequencing platforms represent a powerful tool in the armory of the genetics researcher to identify the causal genetic basis of NTDs.

Indexed as

Genetic Predisposition to DiseaseBase SequenceExomeGenetic VariationGenome-Wide Association StudyHigh-Throughput Nucleotide SequencingHumansNeural TubeNeural Tube DefectsSequence Analysis, DNAcompound heterozygosityde novo, rare and common variationnext generation exome sequencing

Identifiers

PMID25044326
PMCPMC4169137
OpenAlexW2158157541

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.