Evidence map›Paper›PMID 25043975›Full record

ArticleArchives of biochemistry and biophysics2014

Agaricus meleagris pyranose dehydrogenase: influence of covalent FAD linkage on catalysis and stability.

Iris Krondorfer, Dagmar Brugger, Regina Paukner, Stefan Scheiblbrandner, Katharina F Pirker, Stefan Hofbauer, Paul G Furtmüller, Christian Obinger, Dietmar Haltrich, Clemens K Peterbauer

Open access · hybridAbstract read
In one paragraph

Article in Archives of biochemistry and biophysics, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.6field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 11 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 1 institution in 1 country.

Iris KrondorferDepartment of Food Science and Technology, Food Biotechnology Laboratory, BOKU - University of Natural Resources and Life Sciences, Muthgasse 11, 1190 Vienna, Austria.
Dagmar BruggerDepartment of Food Science and Technology, Food Biotechnology Laboratory, BOKU - University of Natural Resources and Life Sciences, Muthgasse 11, 1190 Vienna, Austria.
Regina PauknerDepartment of Food Science and Technology, Food Biotechnology Laboratory, BOKU - University of Natural Resources and Life Sciences, Muthgasse 11, 1190 Vienna, Austria.
Stefan ScheiblbrandnerDepartment of Food Science and Technology, Food Biotechnology Laboratory, BOKU - University of Natural Resources and Life Sciences, Muthgasse 11, 1190 Vienna, Austria.
Katharina F PirkerDepartment of Chemistry, Division of Biochemistry, BOKU - University of Natural Resources and Life Sciences, Muthgasse 18, 1190 Vienna, Austria.
Stefan HofbauerDepartment of Chemistry, Division of Biochemistry, BOKU - University of Natural Resources and Life Sciences, Muthgasse 18, 1190 Vienna, Austria.
Paul G FurtmüllerDepartment of Chemistry, Division of Biochemistry, BOKU - University of Natural Resources and Life Sciences, Muthgasse 18, 1190 Vienna, Austria.
Christian ObingerDepartment of Chemistry, Division of Biochemistry, BOKU - University of Natural Resources and Life Sciences, Muthgasse 18, 1190 Vienna, Austria.
Dietmar HaltrichDepartment of Food Science and Technology, Food Biotechnology Laboratory, BOKU - University of Natural Resources and Life Sciences, Muthgasse 11, 1190 Vienna, Austria.
Clemens K PeterbauerDepartment of Food Science and Technology, Food Biotechnology Laboratory, BOKU - University of Natural Resources and Life Sciences, Muthgasse 11, 1190 Vienna, Austria. Electronic address: clemens.peterbauer@boku.ac.at.
BOKU University · AT

Funding

Austrian Science Fund FWF P 22094Austrian Science Fund FWF W 1224
6 · The paper itself

Abstract

Pyranose dehydrogenase (PDH) is a monomeric flavoprotein belonging to the glucose-methanol-choline (GMC) family of oxidoreductases. It catalyzes the oxidation of free, non-phosphorylated sugars to the corresponding keto sugars. The enzyme harbors an FAD cofactor that is covalently attached to histidine 103 via an 8α-N(3) histidyl linkage. Our previous work showed that variant H103Y was still able to bind FAD (non-covalently) and perform catalysis but steady-state kinetic parameters for several substrates were negatively affected. In order to investigate the impact of the covalent FAD attachment in Agaricus meleagris PDH in more detail, pre-steady-state kinetics, reduction potential and stability of the variant H103Y in comparison to the wild-type enzyme were probed. Stopped-flow analysis revealed that the mutation slowed down the reductive half-reaction by around three orders of magnitude whereas the oxidative half-reaction was affected only to a minor degree. This was reflected by a decrease in the standard reduction potential of variant H103Y compared to the wild-type protein. The existence of an anionic semiquinone radical in the resting state of both the wild-type and variant H103Y was demonstrated using electron paramagnetic resonance (EPR) spectroscopy and suggested a higher mobility of the cofactor in the variant H103Y. Unfolding studies showed significant negative effects of the disruption of the covalent bond on thermal and conformational stability. The results are discussed with respect to the role of covalently bound FAD in catalysis and stability.

Indexed as

BiocatalysisAgaricusBenzoquinonesCarbohydrate MetabolismEnzyme StabilityFlavin-Adenine DinucleotideOxidation-ReductionOxidoreductasesProtein ConformationTemperatureBenzoquinonesFlavin-Adenine DinucleotideOxidoreductasessemiquinone radicalsConformational stabilityCovalent flavinylationFADPyranose dehydrogenaseSemiquinone radicalThermal stability

Identifiers

PMID25043975
PMCPMC4148704
OpenAlexW2026475857

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.