Evidence map›Paper›PMID 25043183›Full record

ArticleCell reports2014

Single-cell mass cytometry analysis of human tonsil T cell remodeling by varicella zoster virus.

Nandini Sen, Gourab Mukherjee, Adrish Sen, Sean C Bendall, Phillip Sung, Garry P Nolan, Ann M Arvin

Abstract read
In one paragraph

Article in Cell reports, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 59 papers.

0numbers the graph read from it
0cells of the map it votes in
59citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

59 citing papers in PubMed.

  1. Vaccination Targeting Native Receptors to Enhance the Function and Proliferation of Chimeric Antigen Receptor (CAR)-Modified T Cells.Clinical cancer research : an official journal of the American Association for Cancer Research · 2017
    Trial
  2. Varicella zoster virus infection.Nature reviews. Disease primers · 2026
    Review
  3. Biological relevance ofMicrobiology and molecular biology reviews : MMBR · 2025
    Review
  4. Article
  5. Article
  6. Review
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  16. Review
  17. Frontiers in cellular and infection microbiology · 2021
    Review
  18. Review
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Nandini SenDepartment of Pediatrics, Stanford University, Stanford, CA 94025, USA.
Gourab MukherjeeDepartment of Statistics, Stanford University, Stanford, CA 94025, USA; Department of Data Sciences and Operations, University of Southern California, Los Angeles, CA 90089, USA.
Adrish SenDepartment of Medicine, Stanford University, Stanford, CA 94025, USA.
Sean C BendallDepartment of Microbiology and Immunology, Stanford University, Stanford, CA 94025, USA.
Phillip SungDepartment of Pediatrics, Stanford University, Stanford, CA 94025, USA.
Garry P NolanDepartment of Microbiology and Immunology, Stanford University, Stanford, CA 94025, USA.
Ann M ArvinDepartment of Pediatrics, Stanford University, Stanford, CA 94025, USA; Department of Microbiology and Immunology, Stanford University, Stanford, CA 94025, USA. Electronic address: aarvin@stanford.edu.

Funding

Using a tonsil organoid system to probe conditions for the induction of protective antibody and T cell responses to influenza.U19AI057229 · NIAID · STANFORD UNIVERSITY · PI Mark Morris Davis · 2003 to 2026
$88.5M
TRIGGERING CELL DEATH IN B CELL LYMPHOMAP01CA034233 · NCI · STANFORD UNIVERSITY · PI FELSHER, DEAN W · 1985 to 2010
$19.5M
TRANS-NETWORK PROJECTSU54CA143907 · NCI · UNIVERSITY OF SOUTHERN CALIFORNIA · PI NOLAN, GARRY P · 2009 to 2013
$15.2M
MODELING THE ROLE OF PROGRESSION IN FOLLICULAR LYMPHOMAU54CA149145 · NCI · STANFORD UNIVERSITY · PI PLEVRITIS, SYLVIA KATINA · 2010 to 2014
$12.1M
The Center for Systemic Control of Cyto-NetworksPN2EY018228 · NEI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI HO, CHIH-MING · 2006 to 2010
$8.2M
Software & Hardware Inference Engines for Automated Determination of Primary CellR01CA130826 · NCI · STANFORD UNIVERSITY · PI NOLAN, GARRY P · 2008 to 2011
$6.7M
Varicella-Zoster Virus: T Cell/Skin Tropisms &ImmunityR01AI020459 · NIAID · STANFORD UNIVERSITY · PI OLIVER, STEFAN LYNE · 1985 to 2023
$6.4M
New Statistical Methods for Medical Signals and ImagesR01EB001988 · NIBIB · STANFORD UNIVERSITY · PI JOHNSTONE, IAIN M · 2003 to 2018
$6.1M
Varicella-zoster Virus: Tegument Proteins in PathogenesisR01AI053846 · NIAID · STANFORD UNIVERSITY · PI ARVIN, ANN · 2003 to 2012
$4.1M
Varicella-Zoster Virus: T Cell/Skin Tropisms & ImmunityR37AI020459 · NIAID · STANFORD UNIVERSITY · PI ARVIN, ANN · 2016 to 2020
$2.0M
A single-cell platform to discover and study regulators of human developmentR00GM104148 · NIGMS · STANFORD UNIVERSITY · PI BENDALL, SEAN CURTIS · 2014 to 2016
$747k
A single-cell platform to discover and study regulators of human developmentK99GM104148 · NIGMS · STANFORD UNIVERSITY · PI BENDALL, SEAN CURTIS · 2013 to 2013
$90k
NCI NIH HHS 1R01CA130826NCI NIH HHS 5U54CA143907NIHNCI NIH HHS P01 CA034233NCI NIH HHS P01CA034233-22A1NCI NIH HHS R01 CA130826NCI NIH HHS U54 CA143907NCI NIH HHS U54 CA149145NCI NIH HHS U54CA149145NEI NIH HHS PN2 EY018228NEI NIH HHS PN2EY018228NHLBI NIH HHS N01-HV-00242NIAID NIH HHS AI05346NIAID NIH HHS NIH AI20459NIAID NIH HHS R01 AI020459NIAID NIH HHS R01 AI053846NIAID NIH HHS R37 AI020459NIAID NIH HHS U19 AI057229NIBIB NIH HHS NIH R01 EB 001988NIBIB NIH HHS R01 EB001988NIGMS NIH HHS K99 GM104148NIGMS NIH HHS K99GM104148-01NIGMS NIH HHS R00 GM104148PHS HHS NIH 41000411217PHS HHS NIH 5-24927
6 · The paper itself

Abstract

Although pathogens must infect differentiated host cells that exhibit substantial diversity, documenting the consequences of infection against this heterogeneity is challenging. Single-cell mass cytometry permits deep profiling based on combinatorial expression of surface and intracellular proteins. We used this method to investigate varicella-zoster virus (VZV) infection of tonsil T cells, which mediate viral transport to skin. Our results indicate that VZV induces a continuum of changes regardless of basal phenotypic and functional T cell characteristics. Contrary to the premise that VZV selectively infects T cells with skin trafficking profiles, VZV infection altered T cell surface proteins to enhance or induce these properties. Zap70 and Akt signaling pathways that trigger such surface changes were activated in VZV-infected naive and memory cells by a T cell receptor (TCR)-independent process. Single-cell mass cytometry is likely to be broadly relevant for demonstrating how intracellular pathogens modulate differentiated cells to support pathogenesis in the natural host.

Indexed as

Cell DifferentiationCells, CulturedFlow CytometryHerpesvirus 3, HumanHost-Pathogen InteractionsHumansModels, BiologicalPalatine TonsilProto-Oncogene Proteins c-aktReceptors, Antigen, T-CellSignal TransductionT-LymphocytesZAP-70 Protein-Tyrosine KinaseProto-Oncogene Proteins c-aktReceptors, Antigen, T-CellZAP70 protein, humanZAP-70 Protein-Tyrosine Kinase

Identifiers

PMID25043183
PMCPMC4127309

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.