Evidence map›Paper›PMID 25041533›Full record

ArticleMolecular microbiology2014

NilD CRISPR RNA contributes to Xenorhabdus nematophila colonization of symbiotic host nematodes.

Jeff L Veesenmeyer, Aaron W Andersen, Xiaojun Lu, Elizabeth A Hussa, Kristen E Murfin, John M Chaston, Adler R Dillman, Karen M Wassarman, Paul W Sternberg, Heidi Goodrich-Blair

Open access · bronzeAbstract read
In one paragraph

Article in Molecular microbiology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
2.6field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 27 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Molecular Regulators of Entomopathogenic Nematode-Bacterial Symbiosis.Results and problems in cell differentiation · 2020
    Review
  8. Article
  9. Article
  10. Article
  11. Overview of CRISPR-Cas9 Biology.Cold Spring Harbor protocols · 2016
    Article
  12. Review
  13. Review
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Jeff L VeesenmeyerDepartment of Bacteriology, University of Wisconsin-Madison, 1550 Linden Dr., Madison, WI, 53706, USA.
Aaron W Andersen
Xiaojun Lu
Elizabeth A Hussa
Kristen E Murfin
John M Chaston
Adler R Dillman
Karen M Wassarman
Paul W Sternberg
Heidi Goodrich-Blair
University of Wisconsin–Madison · USCalifornia Institute of Technology · US

Funding

PREDOCTORAL TRAINING IN BIOLOGY AND CHEMISTRYT32GM007616 · NIGMS · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI STERNBERG, PAUL WARREN · 1985 to 2019
$22.9M
Microbial Pathogenesis &Host Responses Training ProgramT32AI055397 · NIAID · UNIVERSITY OF WISCONSIN-MADISON · PI KLEIN, BRUCE STEVEN · 2003 to 2024
$5.5M
Molecular mechanisms of X. nematophila-nematode interactionR01GM059776 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI GOODRICH-BLAIR, HEIDI · 1999 to 2007
$2.4M
Investigation of a novel clonal variation pathway in Xenorhabdus nematophilaF32AI084441 · NIAID · UNIVERSITY OF WISCONSIN-MADISON · PI HUSSA, ELIZABETH A · 2009 to 2010
$93k
Howard Hughes Medical InstituteNIAID NIH HHS 1F32AI084441NIAID NIH HHS F32 AI084441NIAID NIH HHS T32 AI055397NIAID NIH HHS T32 AI55397NIGMS NIH HHS R01 GM059776NIGMS NIH HHS T32 GM007616NIGMS NIH HHS T32GM07616
6 · The paper itself

Abstract

The bacterium Xenorhabdus nematophila is a mutualist of entomopathogenic Steinernema carpocapsae nematodes and facilitates infection of insect hosts. X. nematophila colonizes the intestine of S. carpocapsae which carries it between insects. In the X. nematophila colonization-defective mutant nilD6::Tn5, the transposon is inserted in a region lacking obvious coding potential. We demonstrate that the transposon disrupts expression of a single CRISPR RNA, NilD RNA. A variant NilD RNA also is expressed by X. nematophila strains from S. anatoliense and S. websteri nematodes. Only nilD from the S. carpocapsae strain of X. nematophila rescued the colonization defect of the nilD6::Tn5 mutant, and this mutant was defective in colonizing all three nematode host species. NilD expression depends on the presence of the associated Cas6e but not Cas3, components of the Type I-E CRISPR-associated machinery. While cas6e deletion in the complemented strain abolished nematode colonization, its disruption in the wild-type parent did not. Likewise, nilD deletion in the parental strain did not impact colonization of the nematode, revealing that the requirement for NilD is evident only in certain genetic backgrounds. Our data demonstrate that NilD RNA is conditionally necessary for mutualistic host colonization and suggest that it functions to regulate endogenous gene expression.

Indexed as

Clustered Regularly Interspaced Short Palindromic RepeatsSymbiosisAnimalsBacterial ProteinsBase SequenceDNA Transposable ElementsIntestinesMolecular Sequence DataMutagenesis, InsertionalRhabditidaRNA, BacterialXenorhabdusBacterial ProteinsDNA Transposable ElementsRNA, Bacterial

Identifiers

PMID25041533
PMCPMC4152777
OpenAlexW1558645513

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.