Evidence map›Paper›PMID 25038827›Full record

ArticleNature medicine2014

The ribonuclease activity of SAMHD1 is required for HIV-1 restriction.

Jeongmin Ryoo, Jongsu Choi, Changhoon Oh, Sungchul Kim, Minji Seo, Seok-Young Kim, Daekwan Seo, Jongkyu Kim, Tommy E White, Alberto Brandariz-Nuñez and 6 more

Abstract read
In one paragraph

Article in Nature medicine, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 177 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
177citing papers in PubMed, 1 pooled it
19.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

177 citing papers in PubMed, 1 synthesis or guideline pooled it, 267 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Article
  4. HIV-1 latency: From acquaintance to confidant.Journal of virus eradication · 2025
    Review
  5. Article
  6. HIV controllers: hope for a functional cure.Frontiers in immunology · 2025
    Review
  7. Article
  8. Review
  9. Article
  10. Article
  11. Article
  12. Review
  13. Article
  14. Article
  15. Review
  16. Advances in HIV Gene Therapy.International journal of molecular sciences · 2024
    Review
  17. Article
  18. Review
  19. Review
  20. Article

117 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

16 authors at 4 institutions in 2 countries.

Jeongmin Ryoo1] Creative Research Initiative Center for Antigen Presentation, Seoul National University, Seoul, Republic of Korea. [2] Department of the Interdisciplinary Program in Genetic Engineering, Seoul National University, Seoul, Republic of Korea.
Jongsu Choi1] Creative Research Initiative Center for Antigen Presentation, Seoul National University, Seoul, Republic of Korea. [2] Department of Biological Sciences, Seoul National University, Seoul, Republic of Korea.
Changhoon Oh1] Creative Research Initiative Center for Antigen Presentation, Seoul National University, Seoul, Republic of Korea. [2] Department of the Interdisciplinary Program in Genetic Engineering, Seoul National University, Seoul, Republic of Korea.
Sungchul Kim1] Creative Research Initiative Center for Antigen Presentation, Seoul National University, Seoul, Republic of Korea. [2] Department of Biological Sciences, Seoul National University, Seoul, Republic of Korea.
Minji Seo1] Creative Research Initiative Center for Antigen Presentation, Seoul National University, Seoul, Republic of Korea. [2] Department of Biological Sciences, Seoul National University, Seoul, Republic of Korea.
Seok-Young Kim1] Creative Research Initiative Center for Antigen Presentation, Seoul National University, Seoul, Republic of Korea. [2] Department of Biological Sciences, Seoul National University, Seoul, Republic of Korea.
Daekwan SeoDepartment of Biological Sciences, Seoul National University, Seoul, Republic of Korea.
Jongkyu Kim1] Department of Biological Sciences, Seoul National University, Seoul, Republic of Korea. [2] Center for RNA Research, Institute for Basic Science, Seoul, Republic of Korea.
Tommy E WhiteDepartment of Microbiology and Immunology, Albert Einstein College of Medicine, Bronx, New York, USA.
Alberto Brandariz-NuñezDepartment of Microbiology and Immunology, Albert Einstein College of Medicine, Bronx, New York, USA.
Felipe Diaz-GrifferoDepartment of Microbiology and Immunology, Albert Einstein College of Medicine, Bronx, New York, USA.
Cheol-Heui YunDepartment of Agricultural Biotechnology, Seoul National University, Seoul, Republic of Korea.
Joseph A HollenbaughCenter for Drug Discovery, Department of Pediatrics, Emory School of Medicine, Atlanta, Georgia, USA.
Baek Kim1] Center for Drug Discovery, Department of Pediatrics, Emory School of Medicine, Atlanta, Georgia, USA. [2] School of Pharmacy, Kyung Hee University, Seoul, Republic of Korea.
Daehyun Baek1] Department of Biological Sciences, Seoul National University, Seoul, Republic of Korea. [2] Center for RNA Research, Institute for Basic Science, Seoul, Republic of Korea. [3] Bioinformatics Institute, Seoul National University, Seoul, Republic of Korea.
Kwangseog Ahn1] Creative Research Initiative Center for Antigen Presentation, Seoul National University, Seoul, Republic of Korea. [2] Department of Biological Sciences, Seoul National University, Seoul, Republic of Korea.
Seoul National University · KRAlbert Einstein College of Medicine · USCenter for Discovery · USInstitute for Basic Science · KR

Funding

Role of Cellular Factors in Retroviral Uncoating and Synthesis of Viral DNAR01AI087390 · NIAID · ALBERT EINSTEIN COLLEGE OF MEDICINE, INC · PI DIAZ-GRIFFERO, FELIPE · 2010 to 2024
$6.8M
Replication fidelity and lentiviral pathogenesisR01AI049781 · NIAID · UNIVERSITY OF ROCHESTER · PI KIM, BAEK · 2002 to 2016
$4.9M
SAMHD1 controls dNTP pool and HIV sensitivity to NRTIsR01GM104198 · NIGMS · UNIVERSITY OF ROCHESTER · PI KIM, BAEK · 2012 to 2018
$2.3M
Role of TNPO3 in HIV-1 ReplicationR21AI102824 · NIAID · ALBERT EINSTEIN COLLEGE OF MEDICINE, INC · PI DIAZ-GRIFFERO, FELIPE · 2013 to 2014
$444k
Replicational Fidelity and Lentivial PathogenesisR56AI049781 · NIAID · EMORY UNIVERSITY · PI KIM, BAEK · 2017 to 2017
$390k
NIAID NIH HHS R01 AI049781NIAID NIH HHS R01 AI087390NIAID NIH HHS R21 AI102824NIAID NIH HHS R56 AI049781NIGMS NIH HHS R01 GM104198
6 · The paper itself

Abstract

The HIV-1 restriction factor SAM domain- and HD domain-containing protein 1 (SAMHD1) is proposed to inhibit HIV-1 replication by depleting the intracellular dNTP pool. However, phosphorylation of SAMHD1 regulates its ability to restrict HIV-1 without decreasing cellular dNTP levels, which is not consistent with a role for SAMHD1 dNTPase activity in HIV-1 restriction. Here, we show that SAMHD1 possesses RNase activity and that the RNase but not the dNTPase function is essential for HIV-1 restriction. By enzymatically characterizing Aicardi-Goutières syndrome (AGS)-associated SAMHD1 mutations and mutations in the allosteric dGTP-binding site of SAMHD1 for defects in RNase or dNTPase activity, we identify SAMHD1 point mutants that cause loss of one or both functions. The RNase-positive and dNTPase-negative SAMHD1D137N mutant is able to restrict HIV-1 infection, whereas the RNase-negative and dNTPase-positive SAMHD1Q548A mutant is defective for HIV-1 restriction. SAMHD1 associates with HIV-1 RNA and degrades it during the early phases of cell infection. SAMHD1 silencing in macrophages and CD4(+) T cells from healthy donors increases HIV-1 RNA stability, rendering the cells permissive for HIV-1 infection. Furthermore, phosphorylation of SAMHD1 at T592 negatively regulates its RNase activity in cells and impedes HIV-1 restriction. Our results reveal that the RNase activity of SAMHD1 is responsible for preventing HIV-1 infection by directly degrading the HIV-1 RNA.

Indexed as

Virus ReplicationAutoimmune Diseases of the Nervous SystemBase SequenceBinding SitesCD4-Positive T-LymphocytesCell Line, TumorHeLa CellsHIV-1HIV InfectionsHumansMacrophagesMonomeric GTP-Binding ProteinsMutationNervous System MalformationsPhosphorylationRibonucleasesMonomeric GTP-Binding ProteinsRibonucleasesRNA, Small InterferingRNA, ViralSAM Domain and HD Domain-Containing Protein 1SAMHD1 protein, human

Identifiers

PMID25038827
PMCPMC4318684
OpenAlexW2086137483

What OpenQuestion holds

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LicenceTDM
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.