Evidence map›Paper›PMID 25038803›Full record

ArticleNature structural & molecular biology2014

Allosteric enhancement of MAP kinase p38α's activity and substrate selectivity by docking interactions.

Yuji Tokunaga, Koh Takeuchi, Hideo Takahashi, Ichio Shimada

Abstract read
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In one paragraph

Article in Nature structural & molecular biology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
2.8field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 48 citations in OpenAlex.

  1. Article
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  7. Review
  8. Phosphorylation of USP29 by CDK1 Governs TWIST1 Stability and Oncogenic Functions.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2023
    Article
  9. Article
  10. The optimal docking strength for reversibly tethered kinases.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  11. Dynamic equilibria in protein kinases.Current opinion in structural biology · 2021
    Review
  12. Review
  13. The methylJournal of biomolecular NMR · 2020
    Article
  14. Article
  15. Article
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  19. Article
  20. Conformational equilibrium defines the variable induction of the multidrug-binding transcriptional repressor QacR.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Yuji Tokunaga1] Research and Development Department, Japan Biological Informatics Consortium, Tokyo, Japan. [2] Graduate School of Pharmaceutical Sciences, University of Tokyo, Tokyo, Japan.
Koh TakeuchiBiomedicinal Information Research Center, National Institute of Advanced Industrial Science and Technology, Tokyo, Japan.
Hideo Takahashi1] Biomedicinal Information Research Center, National Institute of Advanced Industrial Science and Technology, Tokyo, Japan. [2] Graduate School of Medical Life Science, Yokohama City University, Kanagawa, Japan.
Ichio Shimada1] Graduate School of Pharmaceutical Sciences, University of Tokyo, Tokyo, Japan. [2] Biomedicinal Information Research Center, National Institute of Advanced Industrial Science and Technology, Tokyo, Japan.
National Institute of Advanced Industrial Science and Technology · JPJapan Biological Informatics Consortium · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Mitogen-activated protein kinases (MAPKs) are essential to intracellular signal transduction. MAPKs anchor their pathway-specific substrates through so-called 'docking interactions' at locations distal from the active site. Docking interactions ensure efficient substrate recognition, but their contribution to the kinase reaction itself remains unclear. Herein, we use solution NMR to analyze the interaction between dually phosphorylated, active human p38α and the C-terminal fragments of its substrate MK2. p38α phosphorylation and ATP loading collaboratively induce the active conformation; subsequently, p38α accommodates MK2 phosphoacceptor residues in its active site. The docking interaction enhances binding of ATP and the phosphoacceptor to p38α, accelerating the phosphotransfer reaction. Thus, the docking interaction enhances p38α's enzymatic activity toward pathway-specific substrates allosterically as well as by the anchor effect. These findings clarify how MAPK cascades are organized in cells, even under ATP-depleted conditions often associated with environmental stress.

Indexed as

Adenosine TriphosphateAdenylyl ImidodiphosphateAllosteric RegulationApoenzymesCatalytic DomainHumansIntracellular Signaling Peptides and ProteinsMAP-Kinase-Activated Kinase 2Mitogen-Activated Protein Kinase 14Molecular Docking SimulationNuclear Magnetic Resonance, BiomolecularPeptide FragmentsPhosphorylationProtein BindingProtein Serine-Threonine KinasesSubstrate SpecificityAdenosine TriphosphateAdenylyl ImidodiphosphateApoenzymesIntracellular Signaling Peptides and ProteinsMAP-Kinase-Activated Kinase 2Mitogen-Activated Protein Kinase 14Peptide FragmentsProtein Serine-Threonine Kinases

Identifiers

PMID25038803
OpenAlexW2167628132

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.