Evidence map›Paper›PMID 25038754›Full record

ArticleNature genetics2014

Genome-wide association analysis in East Asians identifies breast cancer susceptibility loci at 1q32.1, 5q14.3 and 15q26.1.

Qiuyin Cai, Ben Zhang, Hyuna Sung, Siew-Kee Low, Sun-Seog Kweon, Wei Lu, Jiajun Shi, Jirong Long, Wanqing Wen, Ji-Yeob Choi and 42 more

Open access · greenAbstract read
In one paragraph

Article in Nature genetics, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 101 papers, 10 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
101citing papers in PubMed, 10 pooled it
13.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

101 citing papers in PubMed, 10 syntheses or guidelines pooled it, 160 citations in OpenAlex.

  1. Pooled it
  2. Genetic alterations inFrontiers in oncology · 2023
    Pooled it
  3. Pooled it
  4. Pooled it
  5. Pooled it
  6. Pooled it
  7. Pooled it
  8. Pooled it
  9. Pooled it
  10. Pooled it
  11. Trial
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Observational
  18. Article
  19. Article
  20. Article

41 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

52 authors at 20 institutions in 9 countries.

Qiuyin CaiDivision of Epidemiology, Department of Medicine, Vanderbilt Epidemiology Center, Vanderbilt-Ingram Cancer Center, Vanderbilt University School of Medicine, Nashville, Tennessee, USA.
Ben ZhangDivision of Epidemiology, Department of Medicine, Vanderbilt Epidemiology Center, Vanderbilt-Ingram Cancer Center, Vanderbilt University School of Medicine, Nashville, Tennessee, USA.
Hyuna Sung1] Department of Biomedical Sciences, Seoul National University College of Medicine, Seoul, South Korea. [2] Genetic Epidemiology Branch, Division of Epidemiology and Genetics, National Cancer Institute, Rockville, Maryland, USA.
Siew-Kee LowLaboratory for Statistical Analysis, Center for Integrative Medical Sciences, RIKEN, Yokohama, Japan.
Sun-Seog Kweon1] Department of Preventive Medicine, Chonnam National University Medical School, Gwangju, South Korea. [2] Jeonnam Regional Cancer Center, Chonnam National University Hwasun Hospital, Hwasun, South Korea.
Wei LuShanghai Municipal Center for Disease Control and Prevention, Shanghai, China.
Jiajun ShiDivision of Epidemiology, Department of Medicine, Vanderbilt Epidemiology Center, Vanderbilt-Ingram Cancer Center, Vanderbilt University School of Medicine, Nashville, Tennessee, USA.ORCID 0000000151940009
Jirong LongDivision of Epidemiology, Department of Medicine, Vanderbilt Epidemiology Center, Vanderbilt-Ingram Cancer Center, Vanderbilt University School of Medicine, Nashville, Tennessee, USA.
Wanqing WenDivision of Epidemiology, Department of Medicine, Vanderbilt Epidemiology Center, Vanderbilt-Ingram Cancer Center, Vanderbilt University School of Medicine, Nashville, Tennessee, USA.
Ji-Yeob Choi1] Department of Biomedical Sciences, Seoul National University College of Medicine, Seoul, South Korea. [2] Cancer Research Institute, Seoul National University College of Medicine, Seoul, South Korea.
Dong-Young Noh1] Cancer Research Institute, Seoul National University College of Medicine, Seoul, South Korea. [2] Department of Surgery, Seoul National University College of Medicine, Seoul, South Korea.
Chen-Yang Shen1] Institute of Biomedical Sciences, Academia Sinica, Taipei, Taiwan. [2] Taiwan Biobank, Academia Sinica, Taipei, Taiwan. [3] Department of Public Health, College of Public Health, China Medical University, Taichung, Taiwan.
Keitaro MatsuoDepartment of Preventive Medicine, Kyushu University Faculty of Medical Sciences, Fukuoka, Japan.
Soo-Hwang Teo1] Cancer Research Initiatives Foundation, Sime Darby Medical Centre, Subang Jaya, Malaysia. [2] University Malaya Cancer Research Institute, Faculty of Medicine, University of Malaya, Kuala Lumpur, Malaysia.
Mi Kyung KimDivision of Cancer Epidemiology and Management, National Cancer Center, Gyeonggi-do, South Korea.
Ui Soon KhooDepartment of Pathology, Li Ka Shing Faculty of Medicine, University of Hong Kong, Hong Kong, China.
Motoki IwasakiEpidemiology Division, Research Center for Cancer Prevention and Screening, National Cancer Center, Tokyo, Japan.
Mikael Hartman1] Saw Swee Hock School of Public Health, National University of Singapore, Singapore. [2] Department of Surgery, National University of Singapore, Singapore. [3] Department of Medical Epidemiology and Biostatistics, Karolinska Institute, Stockholm, Sweden.
Atsushi TakahashiLaboratory for Statistical Analysis, Center for Integrative Medical Sciences, RIKEN, Yokohama, Japan.
Kyota AshikawaLaboratory for Genotyping Development, Center for Integrative Medical Sciences, RIKEN, Yokohama, Japan.
Koichi MatsudaLaboratory of Molecular Medicine, Human Genome Center, Institute of Medical Science, The University of Tokyo, Tokyo, Japan.ORCID 0000000172922686
Min-Ho ShinDepartment of Preventive Medicine, Chonnam National University Medical School, Gwangju, South Korea.
Min Ho ParkDepartment of Surgery, Chonnam National University Medical School, Gwangju, South Korea.
Ying ZhengShanghai Municipal Center for Disease Control and Prevention, Shanghai, China.
Yong-Bing XiangDepartment of Epidemiology, Shanghai Cancer Institute, Shanghai, China.
Bu-Tian JiDivision of Cancer Epidemiology and Genetics, National Cancer Institute, US National Institutes of Health, US Department of Health and Human Services, Bethesda, Maryland, USA.
Sue K Park1] Department of Biomedical Sciences, Seoul National University College of Medicine, Seoul, South Korea. [2] Cancer Research Institute, Seoul National University College of Medicine, Seoul, South Korea. [3] Department of Preventive Medicine, Seoul National University College of Medicine, Seoul, South Korea.
Pei-Ei Wu1] Institute of Biomedical Sciences, Academia Sinica, Taipei, Taiwan. [2] Taiwan Biobank, Academia Sinica, Taipei, Taiwan.
Chia-Ni Hsiung1] Institute of Biomedical Sciences, Academia Sinica, Taipei, Taiwan. [2] Taiwan Biobank, Academia Sinica, Taipei, Taiwan.
Hidemi ItoDivision of Epidemiology and Prevention, Aichi Cancer Center Research Institute, Nagoya, Japan.
Yoshio KasugaDepartment of Surgery, Nagano Matsushiro General Hospital, Nagano, Japan.
Peter KangCancer Research Initiatives Foundation, Sime Darby Medical Centre, Subang Jaya, Malaysia.
Shivaani Mariapun1] Cancer Research Initiatives Foundation, Sime Darby Medical Centre, Subang Jaya, Malaysia. [2] University Malaya Cancer Research Institute, Faculty of Medicine, University of Malaya, Kuala Lumpur, Malaysia.
Sei Hyun AhnDepartment of Surgery, College of Medicine, University of Ulsan, Asan Medical Center, Seoul, South Korea.
Han Sung KangCenter for Breast Cancer, National Cancer Center, Gyeonggi-do, South Korea.
Kelvin Y K Chan1] Department of Pathology, Li Ka Shing Faculty of Medicine, University of Hong Kong, Hong Kong, China. [2] Department of Obstetrics and Gynaecology, Queen Mary Hospital, Li Ka Shing Faculty of Medicine, University of Hong Kong, Hong Kong, China.
Ellen P S ManDepartment of Pathology, Li Ka Shing Faculty of Medicine, University of Hong Kong, Hong Kong, China.
Hiroji IwataDepartment of Breast Oncology, Aichi Cancer Center Central Hospital, Nagoya, Japan.
Shoichiro TsuganeResearch Center for Cancer Prevention and Screening, National Cancer Center, Tokyo, Japan.
Hui Miao1] Saw Swee Hock School of Public Health, National University of Singapore, Singapore. [2] Department of Surgery, National University of Singapore, Singapore.
Jiemin Liao1] Singapore Eye Research Institute, Singapore. [2] Department of Ophthalmology, National University of Singapore and National University Health System, Singapore.
Yusuke NakamuraDepartment of Medicine, University of Chicago, Chicago, Illinois, USA.
Michiaki KuboLaboratory for Genotyping Development, Center for Integrative Medical Sciences, RIKEN, Yokohama, Japan.
DRIVE GAME-ON Consortium
Ryan J DelahantyDivision of Epidemiology, Department of Medicine, Vanderbilt Epidemiology Center, Vanderbilt-Ingram Cancer Center, Vanderbilt University School of Medicine, Nashville, Tennessee, USA.
Yanfeng ZhangDivision of Epidemiology, Department of Medicine, Vanderbilt Epidemiology Center, Vanderbilt-Ingram Cancer Center, Vanderbilt University School of Medicine, Nashville, Tennessee, USA.
Bingshan LiDepartment of Molecular Physiology and Biophysics, Vanderbilt University School of Medicine, Nashville, Tennessee, USA.
Chun LiDepartment of Biostatistics, Vanderbilt University School of Medicine, Nashville, Tennessee, USA.
Yu-Tang GaoDepartment of Epidemiology, Shanghai Cancer Institute, Shanghai, China.
Xiao-Ou ShuDivision of Epidemiology, Department of Medicine, Vanderbilt Epidemiology Center, Vanderbilt-Ingram Cancer Center, Vanderbilt University School of Medicine, Nashville, Tennessee, USA.
Daehee Kang1] Department of Biomedical Sciences, Seoul National University College of Medicine, Seoul, South Korea. [2] Cancer Research Institute, Seoul National University College of Medicine, Seoul, South Korea. [3] Department of Preventive Medicine, Seoul National University College of Medicine, Seoul, South Korea.
Wei ZhengDivision of Epidemiology, Department of Medicine, Vanderbilt Epidemiology Center, Vanderbilt-Ingram Cancer Center, Vanderbilt University School of Medicine, Nashville, Tennessee, USA.
Vanderbilt University · USSeoul National University · KRRIKEN Center for Integrative Medical Sciences · JPChinese University of Hong Kong · HKChonnam National University Hospital · KRAichi Cancer Center · JPInstitute of Biomedical Sciences, Academia Sinica · TWNational Cancer Center · KRNational University of Singapore · SGShanghai Cancer Institute · CNShanghai Municipal Center For Disease Control Prevention · CNUniversity Malaya Medical Centre · MYAsan Medical Center · KRCancer Research Malaysia · MYChina Medical University · TWKyushu University · JPNagano Matsushiro General Hospital · JPNational Institutes of Health · USSingapore National Eye Center · SGThe University of Tokyo · JP

Funding

Tumor Immunology and Microenvironment Research ProgramP30CA068485 · NCI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI MATTHEW J TYSKA · 1995 to 2026
$172.8M
Epidemiologic StudiesU19CA148065 · NCI · HARVARD SCHOOL OF PUBLIC HEALTH · PI AHSAN, HABIBUL, BRUGGE, JOAN SIEFERT · 2010 to 2014
$10.6M
Shanghai Womens Health StudyUM1CA182910 · NCI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI ZHENG, WEI · 2014 to 2018
$5.9M
Shanghai Breast Cancer StudyR01CA064277 · NCI · VANDERBILT UNIVERSITY · PI SHU, XIAO-OU · 1996 to 2012
$4.8M
Cancer Risk Reduction and Diet: A Cohort Study of WomenR37CA070867 · NCI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI ZHENG, WEI · 2009 to 2013
$4.7M
Consortium Study to Identify Breast Cancer Susceptibility LociR01CA148667 · NCI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI LONG, JIRONG, ZHENG, WEI · 2011 to 2015
$3.3M
Genetic Factors for Breast Cancer- A genome Wide StudyR01CA124558 · NCI · VANDERBILT UNIVERSITY · PI ZHENG, WEI · 2008 to 2012
$3.1M
Breast Cancer Survival: Lifestyle and Genetic DeterminantsR01CA118229 · NCI · VANDERBILT UNIVERSITY · PI SHU, XIAO-OU · 2007 to 2010
$2.9M
Genome-wide Copy Number Variation and Breast Cancer RiskR01CA137013 · NCI · VANDERBILT UNIVERSITY · PI LONG, JIRONG · 2009 to 2012
$2.4M
Soyfood, Gene Polymorphisms and Endometrial Cancer RiskR01CA092585 · NCI · VANDERBILT UNIVERSITY · PI SHU, XIAO-OU · 2001 to 2010
$2.3M
Cell Cycle/Apoptosis Gene Variants and Breast Cancer RiskR01CA122756 · NCI · VANDERBILT UNIVERSITY · PI CAI, QIUYIN · 2008 to 2011
$2.1M
Role of Shh in developmental patterning and proliferation of digit skeletonZ01BC011118 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI MACKEM, SUSAN · 2008 to 2008
$297k
Intramural NIH HHS Z01 BC011118NCI NIH HHS P30 CA068485NCI NIH HHS P30CA068485NCI NIH HHS R01 CA064277NCI NIH HHS R01CA064277NCI NIH HHS R01 CA092585NCI NIH HHS R01CA092585NCI NIH HHS R01 CA118229NCI NIH HHS R01CA118229NCI NIH HHS R01 CA122756NCI NIH HHS R01CA122756NCI NIH HHS R01 CA124558NCI NIH HHS R01CA124558NCI NIH HHS R01 CA137013NCI NIH HHS R01CA137013NCI NIH HHS R01 CA148667NCI NIH HHS R01CA148667NCI NIH HHS R37 CA070867NCI NIH HHS R37CA070867NCI NIH HHS U19 CA148065NCI NIH HHS U19CA148065NCI NIH HHS UM1 CA182910
6 · The paper itself

Abstract

In a three-stage genome-wide association study among East Asian women including 22,780 cases and 24,181 controls, we identified 3 genetic loci newly associated with breast cancer risk, including rs4951011 at 1q32.1 (in intron 2 of the ZC3H11A gene; P=8.82×10(-9)), rs10474352 at 5q14.3 (near the ARRDC3 gene; P=1.67×10(-9)) and rs2290203 at 15q26.1 (in intron 14 of the PRC1 gene; P=4.25×10(-8)). We replicated these associations in 16,003 cases and 41,335 controls of European ancestry (P=0.030, 0.004 and 0.010, respectively). Data from the ENCODE Project suggest that variants rs4951011 and rs10474352 might be located in an enhancer region and transcription factor binding sites, respectively. This study provides additional insights into the genetics and biology of breast cancer.

Indexed as

AdultAsia, EasternAsian PeopleBreast NeoplasmsCase-Control StudiesChromosomes, Human, Pair 1Chromosomes, Human, Pair 15Chromosomes, Human, Pair 5FemaleGenetic LociGenetic Predisposition to DiseaseGenome-Wide Association StudyHumansMiddle AgedRiskWhite People

Identifiers

PMID25038754
PMCPMC4127632
OpenAlexW2067272783

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.