Evidence map›Paper›PMID 25038751›Full record

ArticleNature genetics2014

The common marmoset genome provides insight into primate biology and evolution.

Marmoset Genome Sequencing and Analysis Consortium

Open access · hybridAbstract read
In one paragraph

Article in Nature genetics, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 129 papers.

0numbers the graph read from it
0cells of the map it votes in
129citing papers in PubMed
12.4field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

129 citing papers in PubMed, 267 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Census and genetic analysis of the United States marmoset population.bioRxiv : the preprint server for biology · 2026
    Article
  6. Article
  7. A Complete Genome for the Common Marmoset.bioRxiv : the preprint server for biology · 2026
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. Marmosets as models of infectious diseases.Frontiers in cellular and infection microbiology · 2024
    Review
  17. Article
  18. Article
  19. Article
  20. Article

69 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

1 author at 20 institutions in 8 countries.

Marmoset Genome Sequencing and Analysis Consortium
Baylor College of Medicine · USLouisiana State University · USUniversity of Geneva · CHUniversidad de Oviedo · ESEuropean Bioinformatics Institute · GBIndiana University Bloomington · USUniversity of Houston · USUniversity of Washington · USInstitució Catalana de Recerca i Estudis Avançats · ESAgency for Science, Technology and Research · SGHoward Hughes Medical Institute · USUniversity of Bari Aldo Moro · ITUniversity of Utah · USWashington University in St. Louis · USWellcome Sanger Institute · GBComenius University Bratislava · SKInstitute for Systems Biology · USThe University of Texas Health Science Center at San Antonio · USUniversitat Pompeu Fabra · ESUniversity of California, Santa Cruz · US

Funding

Large Scale Genome SequencingU54HG003079 · NHGRI · WASHINGTON UNIVERSITY · PI DUTCHER, SUSAN K · 2004 to 2016
$445.7M
The Human Genome Sequencing CenterU54HG003273 · NHGRI · BAYLOR COLLEGE OF MEDICINE · PI GIBBS, RICHARD A · 2004 to 2015
$341.3M
The Southwest National Primate Research Center Supplement- Infrastructure improvements of ABSL2 holding areasP51OD011133 · OD · TEXAS BIOMEDICAL RESEARCH INSTITUTE · PI Larry S. Schlesinger · 2012 to 2026
$129.7M
ZOLEDRONATE PREVENTS BONE LOSS IN OVARIECTOMIZED RHESUS MONKEYSP51RR000167 · NCRR · UNIVERSITY OF WISCONSIN-MADISON · PI WATKINS, DAVID I · 1985 to 2011
$106.7M
The UCSC Genome BrowserU41HG002371 · NHGRI · UNIVERSITY OF CALIFORNIA SANTA CRUZ · PI KENT, WILLIAM JAMES · 2012 to 2021
$36.6M
Sequence and Assembly of Segmental DuplicationsR01HG002385 · NHGRI · UNIVERSITY OF WASHINGTON · PI Evan Eichler · 2001 to 2026
$13.3M
POPULATION GENETICS OF MOBILE ELEMENTSR01GM059290 · NIGMS · UNIVERSITY OF UTAH · PI BATZER, MARK A, FESCHOTTE, CEDRIC · 1999 to 2018
$8.5M
Conserved Fetal Epigenomic Signatures in a Primate Model of Maternal ObesityR01DK089201 · NIDDK · BAYLOR COLLEGE OF MEDICINE · PI AAGAARD, KJERSTI MARIE · 2012 to 2021
$5.1M
The Common Marmoset as a Primate Model of Maternal ObesityR01DK077639 · NIDDK · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI POWER, MICHAEL L., TARDIF, SUZETTE D · 2006 to 2010
$1.2M
High-throughput Mobile Element Genotyping Using Next-generation SequencingK99HG005846 · NHGRI · UNIVERSITY OF UTAH · PI XING, JINCHUAN · 2010 to 2011
$179k
European Research Council 260372Howard Hughes Medical InstituteNCRR NIH HHS P51 RR000167NHGRI NIH HHS K99 HG005846NHGRI NIH HHS R01 HG002385NHGRI NIH HHS U41 HG002371NHGRI NIH HHS U54 HG003079NHGRI NIH HHS U54 HG003273NIDDK NIH HHS R01 DK077639NIDDK NIH HHS R01 DK089201NIGMS NIH HHS R01 GM059290NIH HHS P51 OD011133Wellcome Trust 095908
6 · The paper itself

Abstract

We report the whole-genome sequence of the common marmoset (Callithrix jacchus). The 2.26-Gb genome of a female marmoset was assembled using Sanger read data (6×) and a whole-genome shotgun strategy. A first analysis has permitted comparison with the genomes of apes and Old World monkeys and the identification of specific features that might contribute to the unique biology of this diminutive primate, including genetic changes that may influence body size, frequent twinning and chimerism. We observed positive selection in growth hormone/insulin-like growth factor genes (growth pathways), respiratory complex I genes (metabolic pathways), and genes encoding immunobiological factors and proteases (reproductive and immunity pathways). In addition, both protein-coding and microRNA genes related to reproduction exhibited evidence of rapid sequence evolution. This genome sequence for a New World monkey enables increased power for comparative analyses among available primate genomes and facilitates biomedical research application.

Indexed as

GenomeAmino Acid SequenceAnimalsCallithrixEvolution, MolecularFemaleMicroRNAsMolecular Sequence DataPhylogenyPolymorphism, Single NucleotideReproductionSequence Analysis, DNAMicroRNAs

Identifiers

PMID25038751
PMCPMC4138798
OpenAlexW1992991337

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.