Evidence map›Paper›PMID 25038553›Full record

ArticleJournal of biomedical informatics2014

OntoVIP: an ontology for the annotation of object models used for medical image simulation.

Bernard Gibaud, Germain Forestier, Hugues Benoit-Cattin, Frédéric Cervenansky, Patrick Clarysse, Denis Friboulet, Alban Gaignard, Patrick Hugonnard, Carole Lartizien, Hervé Liebgott and 3 more

Abstract read
In one paragraph

Article in Journal of biomedical informatics, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Bernard GibaudLTSI - Laboratoire Traitement du Signal et de l'Image, INSERM U1099 - Université de Rennes 1, Faculté de médecine, 2 av. Pr Léon Bernard, 35043 Rennes Cedex, France. Electronic address: bernard.gibaud@univ-rennes1.fr.
Germain ForestierMIPS - Modélisation, Intelligence, Processus et Systèmes - MIPS EA2332 - Université de Haute-Alsace, 12, Rue des frères Lumière, 68093 Mulhouse, France.
Hugues Benoit-CattinCREATIS - Centre de Recherche et d'Applications en Traitement de l'Image et du Signal, CNRS UMR 5220 - Inserm U1044 - INSA-Lyon - Univ. Lyon 1, Bâtiment Blaise Pascal, 7 av. Jean Capelle, 69621 Villeurbanne Cedex, France.
Frédéric CervenanskyCREATIS - Centre de Recherche et d'Applications en Traitement de l'Image et du Signal, CNRS UMR 5220 - Inserm U1044 - INSA-Lyon - Univ. Lyon 1, Bâtiment Blaise Pascal, 7 av. Jean Capelle, 69621 Villeurbanne Cedex, France.
Patrick ClarysseCREATIS - Centre de Recherche et d'Applications en Traitement de l'Image et du Signal, CNRS UMR 5220 - Inserm U1044 - INSA-Lyon - Univ. Lyon 1, Bâtiment Blaise Pascal, 7 av. Jean Capelle, 69621 Villeurbanne Cedex, France.
Denis FribouletCREATIS - Centre de Recherche et d'Applications en Traitement de l'Image et du Signal, CNRS UMR 5220 - Inserm U1044 - INSA-Lyon - Univ. Lyon 1, Bâtiment Blaise Pascal, 7 av. Jean Capelle, 69621 Villeurbanne Cedex, France.
Alban GaignardI3S - Laboratoire d'Informatique, Signaux et Systèmes de Sophia Antipolis, CNRS UMR 7271/Université Nice Sophia Antipolis, 2000, Route des Lucioles, Les Algorithmes - bât. Algorithm B, 06903 Sophia Antipolis Cedex, France.
Patrick HugonnardCEA-LETI-MINATEC, Recherche technologique, 17, Rue des Martyrs, 38054 Grenoble Cedex 09, France.
Carole LartizienCREATIS - Centre de Recherche et d'Applications en Traitement de l'Image et du Signal, CNRS UMR 5220 - Inserm U1044 - INSA-Lyon - Univ. Lyon 1, Bâtiment Blaise Pascal, 7 av. Jean Capelle, 69621 Villeurbanne Cedex, France.
Hervé LiebgottCREATIS - Centre de Recherche et d'Applications en Traitement de l'Image et du Signal, CNRS UMR 5220 - Inserm U1044 - INSA-Lyon - Univ. Lyon 1, Bâtiment Blaise Pascal, 7 av. Jean Capelle, 69621 Villeurbanne Cedex, France.
Johan MontagnatI3S - Laboratoire d'Informatique, Signaux et Systèmes de Sophia Antipolis, CNRS UMR 7271/Université Nice Sophia Antipolis, 2000, Route des Lucioles, Les Algorithmes - bât. Algorithm B, 06903 Sophia Antipolis Cedex, France.
Joachim TabaryCEA-LETI-MINATEC, Recherche technologique, 17, Rue des Martyrs, 38054 Grenoble Cedex 09, France.
Tristan GlatardCREATIS - Centre de Recherche et d'Applications en Traitement de l'Image et du Signal, CNRS UMR 5220 - Inserm U1044 - INSA-Lyon - Univ. Lyon 1, Bâtiment Blaise Pascal, 7 av. Jean Capelle, 69621 Villeurbanne Cedex, France.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

This paper describes the creation of a comprehensive conceptualization of object models used in medical image simulation, suitable for major imaging modalities and simulators. The goal is to create an application ontology that can be used to annotate the models in a repository integrated in the Virtual Imaging Platform (VIP), to facilitate their sharing and reuse. Annotations make the anatomical, physiological and pathophysiological content of the object models explicit. In such an interdisciplinary context we chose to rely on a common integration framework provided by a foundational ontology, that facilitates the consistent integration of the various modules extracted from several existing ontologies, i.e. FMA, PATO, MPATH, RadLex and ChEBI. Emphasis is put on methodology for achieving this extraction and integration. The most salient aspects of the ontology are presented, especially the organization in model layers, as well as its use to browse and query the model repository.

Indexed as

Diagnostic ImagingInternetSemanticsVocabulary, ControlledBrainComputer SimulationHumansImage Processing, Computer-AssistedModels, TheoreticalSoftwareMedical imagingOntologiesOntology web languageSemantic webSimulation

Identifiers

PMID25038553
PMCPMC5943577

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.