Evidence map›Paper›PMID 25037222›Full record

ArticleThe Journal of biological chemistry2014

A conserved phenylalanine as a relay between the α5 helix and the GDP binding region of heterotrimeric Gi protein α subunit.

Ali I Kaya, Alyssa D Lokits, James A Gilbert, Tina M Iverson, Jens Meiler, Heidi E Hamm

Abstract read
In one paragraph

Article in The Journal of biological chemistry, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers.

0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

36 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. G Protein Activation Occurs via a Largely Universal Mechanism.The journal of physical chemistry. B · 2024
    Article
  5. Article
  6. Review
  7. Article
  8. β2-adrenoceptor ligand efficacy is tuned by a two-stage interaction with the Gαs C terminus.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  9. Article
  10. Article
  11. Structural basis for GPCR-independent activation of heterotrimeric Gi proteins.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  12. Conformational plasticity of the intracellular cavity of GPCR-G-protein complexes leads to G-protein promiscuity and selectivity.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  13. Article
  14. Article
  15. A New Multisystem Disorder Caused by the Gαs Mutation p.F376V.The Journal of clinical endocrinology and metabolism · 2019
    Article
  16. Recent advances in computational studies of GPCR-G protein interactions.Advances in protein chemistry and structural biology · 2019
    Review
  17. Rules of Engagement: GPCRs and G Proteins.ACS pharmacology & translational science · 2018
    Review
  18. Comparative structural dynamic analysis of GTPases.PLoS computational biology · 2018
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Ali I KayaFrom the Departments of Pharmacology.
Alyssa D LokitsNeuroscience.
James A GilbertFrom the Departments of Pharmacology.
Tina M IversonFrom the Departments of Pharmacology, Biochemistry, and.
Jens MeilerFrom the Departments of Pharmacology, Chemistry, Vanderbilt University Medical Center, Nashville, Tennessee 37232.
Heidi E HammFrom the Departments of Pharmacology, Heidi.hamm@vanderbilt.edu.

Funding

IMMUNOLOGICAL STUDIES OF VISUAL TRANSDUCTION PATHWAYSR01EY006062 · NEI · VANDERBILT UNIVERSITY · PI HAMM, HEIDI E · 1985 to 2017
$5.6M
Membrane Protein Structure Elucidation from sparse NMR data (KAMP)R01GM080403 · NIGMS · VANDERBILT UNIVERSITY · PI MEILER, JENS · 2007 to 2019
$3.0M
Cheminformatics of Allosteric mGluR Modulation promotes Therapeutic DevelopmentR01MH090192 · NIMH · VANDERBILT UNIVERSITY · PI MEILER, JENS · 2010 to 2013
$1.5M
Computational Design of Protein-Ligand Interfaces - a Therapeutic StrategyR01GM099842 · NIGMS · VANDERBILT UNIVERSITY · PI MEILER, JENS · 2012 to 2015
$1.3M
Stabilization of Membrane Protein Signaling ComplexesR01GM095633 · NIGMS · VANDERBILT UNIVERSITY · PI IVERSON, T M · 2010 to 2013
$1.2M
Small Molecule Probes to Investigate Structure and Function of Y ReceptorsR01DK097376 · NIDDK · VANDERBILT UNIVERSITY · PI MEILER, JENS, WEAVER, C DAVID · 2013 to 2015
$1.0M
Crystallographic AutomationS10RR026915 · NCRR · VANDERBILT UNIVERSITY · PI IVERSON, T M · 2010 to 2010
$490k
NCRR NIH HHS S10 RR026915NEI NIH HHS EY006062NEI NIH HHS R01 EY006062NIDDK NIH HHS DK097376NIDDK NIH HHS R01 DK097376NIGMS NIH HHS GM080403NIGMS NIH HHS GM095633NIGMS NIH HHS GM099842NIGMS NIH HHS R01 GM080403NIGMS NIH HHS R01 GM095633NIGMS NIH HHS R01 GM099842NIMH NIH HHS MH090192NIMH NIH HHS R01 MH090192
6 · The paper itself

Abstract

G protein activation by G protein-coupled receptors is one of the critical steps for many cellular signal transduction pathways. Previously, we and other groups reported that the α5 helix in the G protein α subunit plays a major role during this activation process. However, the precise signaling pathway between the α5 helix and the guanosine diphosphate (GDP) binding pocket remains elusive. Here, using structural, biochemical, and computational techniques, we probed different residues around the α5 helix for their role in signaling. Our data showed that perturbing the Phe-336 residue disturbs hydrophobic interactions with the β2-β3 strands and α1 helix, leading to high basal nucleotide exchange. However, mutations in β strands β5 and β6 do not perturb G protein activation. We have highlighted critical residues that leverage Phe-336 as a relay. Conformational changes are transmitted starting from Phe-336 via β2-β3/α1 to Switch I and the phosphate binding loop, decreasing the stability of the GDP binding pocket and triggering nucleotide release. When the α1 and α5 helices were cross-linked, inhibiting the receptor-mediated displacement of the C-terminal α5 helix, mutation of Phe-336 still leads to high basal exchange rates. This suggests that unlike receptor-mediated activation, helix 5 rotation and translocation are not necessary for GDP release from the α subunit. Rather, destabilization of the backdoor region of the Gα subunit is sufficient for triggering the activation process.

Indexed as

Crystallography, X-RayGTP-Binding Protein alpha SubunitsGuanosine DiphosphateModels, MolecularPhenylalanineProtein ConformationGTP-Binding Protein alpha SubunitsGuanosine DiphosphatePhenylalanineComputer ModelingGDP ReleaseG Protein-coupled Receptor (GPCR)Heterotrimeric G ProteinProtein ConformationRhodopsinSignal Transduction

Identifiers

PMID25037222
PMCPMC4148873

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.