Evidence map›Paper›PMID 25036769›Full record

ArticleMedical image analysis2014

On combining image-based and ontological semantic dissimilarities for medical image retrieval applications.

Camille Kurtz, Adrien Depeursinge, Sandy Napel, Christopher F Beaulieu, Daniel L Rubin

Abstract read
In one paragraph

Article in Medical image analysis, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. A novel image-based retrieval system for characterization of maxillofacial lesions in cone beam CT images.International journal of computer assisted radiology and surgery · 2019
    Article
  5. Review
  6. Article
  7. Inferring Generative Model Structure with Static Analysis.Advances in neural information processing systems · 2017
    Article
  8. A new method for the automatic retrieval of medical cases based on the RadLex ontology.International journal of computer assisted radiology and surgery · 2017
    Article
  9. Article
  10. Article
  11. Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Camille KurtzDepartment of Radiology, School of Medicine, Stanford University, USA; LIPADE Laboratory (EA 2517), University Paris Descartes, France. Electronic address: camille.kurtz@parisdescartes.fr.
Adrien DepeursingeDepartment of Radiology, School of Medicine, Stanford University, USA. Electronic address: adepeurs@stanford.edu.
Sandy NapelDepartment of Radiology, School of Medicine, Stanford University, USA. Electronic address: snapel@stanford.edu.
Christopher F BeaulieuDepartment of Radiology, School of Medicine, Stanford University, USA. Electronic address: beaulieu@stanford.edu.
Daniel L RubinDepartment of Radiology, School of Medicine, Stanford University, USA. Electronic address: dlrubin@stanford.edu.

Funding

Tools for Linking and Mining image and Genomic Data in Non-Small Cell Lung CancerR01CA160251 · NCI · STANFORD UNIVERSITY · PI NAPEL, SANDY A., PLEVRITIS, SYLVIA KATINA · 2011 to 2015
$2.9M
Computerized Quantitative Imaging Assessment of Tumor BurdenU01CA142555 · NCI · STANFORD UNIVERSITY · PI RUBIN, DANIEL L · 2010 to 2014
$2.9M
NCI NIH HHS R01 CA160251NCI NIH HHS U01 CA142555NCI NIH HHS U01CA142555-01
6 · The paper itself

Abstract

Computer-assisted image retrieval applications can assist radiologists by identifying similar images in archives as a means to providing decision support. In the classical case, images are described using low-level features extracted from their contents, and an appropriate distance is used to find the best matches in the feature space. However, using low-level image features to fully capture the visual appearance of diseases is challenging and the semantic gap between these features and the high-level visual concepts in radiology may impair the system performance. To deal with this issue, the use of semantic terms to provide high-level descriptions of radiological image contents has recently been advocated. Nevertheless, most of the existing semantic image retrieval strategies are limited by two factors: they require manual annotation of the images using semantic terms and they ignore the intrinsic visual and semantic relationships between these annotations during the comparison of the images. Based on these considerations, we propose an image retrieval framework based on semantic features that relies on two main strategies: (1) automatic "soft" prediction of ontological terms that describe the image contents from multi-scale Riesz wavelets and (2) retrieval of similar images by evaluating the similarity between their annotations using a new term dissimilarity measure, which takes into account both image-based and ontological term relations. The combination of these strategies provides a means of accurately retrieving similar images in databases based on image annotations and can be considered as a potential solution to the semantic gap problem. We validated this approach in the context of the retrieval of liver lesions from computed tomographic (CT) images and annotated with semantic terms of the RadLex ontology. The relevance of the retrieval results was assessed using two protocols: evaluation relative to a dissimilarity reference standard defined for pairs of images on a 25-images dataset, and evaluation relative to the diagnoses of the retrieved images on a 72-images dataset. A normalized discounted cumulative gain (NDCG) score of more than 0.92 was obtained with the first protocol, while AUC scores of more than 0.77 were obtained with the second protocol. This automatical approach could provide real-time decision support to radiologists by showing them similar images with associated diagnoses and, where available, responses to therapies.

Indexed as

SemanticsTomography, X-Ray ComputedAlgorithmsHumansImaging, Three-DimensionalInformation Storage and RetrievalLiver NeoplasmsComputed tomographic (CT) imagesImage annotationImage retrievalRiesz waveletsSemantic dissimilarities

Identifiers

PMID25036769
PMCPMC4173098

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.