Evidence map›Paper›PMID 25036097›Full record

ArticlePloS one2014

The EAR motif controls the early flowering and senescence phenotype mediated by over-expression of SlERF36 and is partly responsible for changes in stomatal density and photosynthesis.

Rakesh Kumar Upadhyay, Asmita Gupta, Sanjay Ranjan, Ruchi Singh, Uday V Pathre, Pravendra Nath, Aniruddha P Sane

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
2.8field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 27 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Rakesh Kumar UpadhyayPlant Gene Expression Lab, CSIR-National Botanical Research Institute (Council of Scientific and Industrial Research), Lucknow, India; Sustainable Agricultural Systems Laboratory, USDA-ARS, Beltsville Agricultural Research Center, Beltsville, Maryland, United States of America; Department of Biology, Pennsylvania State University, Harrisburg, Pennsylvania, United States of America.
Asmita GuptaPlant Gene Expression Lab, CSIR-National Botanical Research Institute (Council of Scientific and Industrial Research), Lucknow, India.
Sanjay RanjanDepartment of Plant Physiology, CSIR-National Botanical Research Institute (Council of Scientific and Industrial Research), Lucknow, India.
Ruchi SinghDepartment of Plant Physiology, CSIR-National Botanical Research Institute (Council of Scientific and Industrial Research), Lucknow, India.
Uday V PathreDepartment of Plant Physiology, CSIR-National Botanical Research Institute (Council of Scientific and Industrial Research), Lucknow, India.
Pravendra NathPlant Gene Expression Lab, CSIR-National Botanical Research Institute (Council of Scientific and Industrial Research), Lucknow, India.
Aniruddha P SanePlant Gene Expression Lab, CSIR-National Botanical Research Institute (Council of Scientific and Industrial Research), Lucknow, India.
Council of Scientific and Industrial Research · INNational Botanical Research Institute · INBeltsville Agricultural Research Center · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The EAR motif is a small seven amino acid motif associated with active repression of several target genes. We had previously identified SlERF36 as an EAR motif containing gene from tomato and shown that its over-expression results in early flowering and senescence and a 25-35% reduction of stomatal density, photosynthesis and stomatal conductance in transgenic tobacco. In order to understand the role of the EAR motif in governing the phenotypes, we have expressed the full-length SlERF36 and a truncated form, lacking the EAR motif under the CaMV35S promoter, in transgenic Arabidopsis. Plants over-expressing the full-length SlERF36 show prominent early flowering under long day as well as short day conditions. The early flowering leads to an earlier onset of senescence in these transgenic plants which in turn reduces vegetative growth, affecting rosette, flower and silique sizes. Stomatal number is reduced by 38-39% while photosynthesis and stomatal conductance decrease by about 30-40%. Transgenic plants over-expressing the truncated version of SlERF36 (lacking the C-terminal EAR motif), show phenotypes largely matching the control with normal flowering and senescence indicating that the early flowering and senescence is governed by the EAR motif. On the other hand, photosynthetic rates and stomatal number were also reduced in plants expressing SlERF36ΔEAR although to a lesser degree compared to the full- length version indicating that these are partly controlled by the EAR motif. These studies show that the major phenotypic changes in plant growth caused by over-expression of SlERF36 are actually mediated by the EAR motif.

Indexed as

PhotosynthesisAmino Acid MotifsArabidopsisFlowersGene ExpressionPhenotypePhotoperiodPlant ProteinsPlants, Genetically ModifiedPlant StomataSolanum lycopersicumPlant Proteins

Identifiers

PMID25036097
PMCPMC4103849
OpenAlexW1999955973

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.