Evidence map›Paper›PMID 25035429›Full record

ArticleThe Journal of biological chemistry2014

Giant virus Megavirus chilensis encodes the biosynthetic pathway for uncommon acetamido sugars.

Francesco Piacente, Cristina De Castro, Sandra Jeudy, Antonio Molinaro, Annalisa Salis, Gianluca Damonte, Cinzia Bernardi, Chantal Abergel, Michela G Tonetti

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.9field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 25 citations in OpenAlex.

  1. Surface fibrils on the particles of nucleocytoviruses: A review.Experimental biology and medicine (Maywood, N.J.) · 2023
    Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Giant viruses of themicroLife · 2022
    Article
  8. Review
  9. Review
  10. The rare sugarThe Journal of biological chemistry · 2017
    Article
  11. Review
  12. The Autonomous Glycosylation of Large DNA Viruses.International journal of molecular sciences · 2015
    Review
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

Francesco PiacenteFrom the Department of Experimental Medicine and Center of Excellence for Biomedical Research, University of Genova, Viale Benedetto XV,1 16132 Genova, Italy.
Cristina De Castrothe Department of Chemical Sciences, University of Napoli "Federico II", Via Cintia 4, Italy.
Sandra Jeudythe Structural and Genomic Information Laboratory, CNRS, Aix-Marseille Université UMR7256, IMM, Parc Scientifique de Luminy, FR-13288 Marseille, France, and.
Antonio Molinarothe Department of Chemical Sciences, University of Napoli "Federico II", Via Cintia 4, Italy.
Annalisa SalisFrom the Department of Experimental Medicine and Center of Excellence for Biomedical Research, University of Genova, Viale Benedetto XV,1 16132 Genova, Italy, the Department of Hearth Environmental and Life Science (DISTAV), University of Genova, Corso Europa 26, 16132 Genova, Italy.
Gianluca DamonteFrom the Department of Experimental Medicine and Center of Excellence for Biomedical Research, University of Genova, Viale Benedetto XV,1 16132 Genova, Italy.
Cinzia BernardiFrom the Department of Experimental Medicine and Center of Excellence for Biomedical Research, University of Genova, Viale Benedetto XV,1 16132 Genova, Italy.
Chantal Abergelthe Structural and Genomic Information Laboratory, CNRS, Aix-Marseille Université UMR7256, IMM, Parc Scientifique de Luminy, FR-13288 Marseille, France, and Chantal.Abergel@igs.cnrs-mrs.fr.
Michela G TonettiFrom the Department of Experimental Medicine and Center of Excellence for Biomedical Research, University of Genova, Viale Benedetto XV,1 16132 Genova, Italy, tonetti@unige.it.
University of Genoa · ITAix-Marseille Université · FRUniversity of Naples Federico II · IT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Giant viruses mimicking microbes, by the sizes of their particles and the heavily glycosylated fibrils surrounding their capsids, infect Acanthamoeba sp., which are ubiquitous unicellular eukaryotes. The glycans on fibrils are produced by virally encoded enzymes, organized in gene clusters. Like Mimivirus, Megavirus glycans are mainly composed of virally synthesized N-acetylglucosamine (GlcNAc). They also contain N-acetylrhamnosamine (RhaNAc), a rare sugar; the enzymes involved in its synthesis are encoded by a gene cluster specific to Megavirus close relatives. We combined activity assays on two enzymes of the pathway with mass spectrometry and NMR studies to characterize their specificities. Mg534 is a 4,6-dehydratase 5-epimerase; its three-dimensional structure suggests that it belongs to a third subfamily of inverting dehydratases. Mg535, next in the pathway, is a bifunctional 3-epimerase 4-reductase. The sequential activity of the two enzymes leads to the formation of UDP-l-RhaNAc. This study is another example of giant viruses performing their glycan synthesis using enzymes different from their cellular counterparts, raising again the question of the origin of these pathways.

Indexed as

Genome, ViralAmino Acid SequenceBiosynthetic PathwaysCarbohydratesDNA VirusesMagnetic Resonance SpectroscopyModels, MolecularMolecular Sequence DataSequence Homology, Amino AcidCarbohydratesCarbohydrate MetabolismGas Chromatography-Mass Spectrometry (GC-MS)GlycosylationMass Spectrometry (MS)Megavirus ChilensisN-Acetyl-L-RhamnosamineNuclear Magnetic Resonance (NMR)UDP-N-acetylglucosamineVirus Structure

Identifiers

PMID25035429
PMCPMC4148869
OpenAlexW2031784780

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.