Evidence map›Paper›PMID 25035417›Full record

ArticleGenes & development2014

Multiple FLC haplotypes defined by independent cis-regulatory variation underpin life history diversity in Arabidopsis thaliana.

Peijin Li, Daniele Filiault, Mathew S Box, Envel Kerdaffrec, Cock van Oosterhout, Amity M Wilczek, Johanna Schmitt, Mark McMullan, Joy Bergelson, Magnus Nordborg and 1 more

Abstract read
In one paragraph

Article in Genes & development, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 66 papers.

0numbers the graph read from it
0cells of the map it votes in
66citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

66 citing papers in PubMed.

  1. Review
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  13. A 215-bp indel at intron I of BoFLC2 affects flowering time in Brassica oleracea var. capitata during vernalization.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2022
    Article
  14. Global Genetic Heterogeneity in Adaptive Traits.Molecular biology and evolution · 2021
    Article
  15. Article
  16. Natural temperature fluctuations promoteGenes & development · 2021
    Article
  17. Beyond the Genetic Pathways, Flowering Regulation Complexity inInternational journal of molecular sciences · 2021
    Review
  18. Article
  19. Article
  20. Article

6 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Peijin LiJohn Innes Centre, Norwich NR4 7UH, United Kingdom; caroline.dean@jic.ac.uk.
Daniele FiliaultGregor Mendel Institute, Austrian Academy of Sciences, 1030 Vienna, Austria;
Mathew S BoxJohn Innes Centre, Norwich NR4 7UH, United Kingdom;
Envel KerdaffrecGregor Mendel Institute, Austrian Academy of Sciences, 1030 Vienna, Austria;
Cock van OosterhoutDepartment of Environmental Sciences, University of East Anglia, Norwich NR4 7TJ, United Kingdom;
Amity M WilczekDeep Spring College, Big Pine, California 93513, USA;
Johanna SchmittUniversity of California at Davis, Davis, California 95616, USA;
Mark McMullanDepartment of Environmental Sciences, University of East Anglia, Norwich NR4 7TJ, United Kingdom;
Joy BergelsonDepartment of Ecology and Evolution, University of Chicago, Chicago, Illinois 60637, USA.
Magnus NordborgGregor Mendel Institute, Austrian Academy of Sciences, 1030 Vienna, Austria;
Caroline DeanJohn Innes Centre, Norwich NR4 7UH, United Kingdom; caroline.dean@jic.ac.uk.

Funding

Re-Engineering Translational Research at the University of ChicagoUL1TR000430 · NCATS · UNIVERSITY OF CHICAGO · PI SOLWAY, JULIAN · 2012 to 2016
$20.2M
Biotechnology and Biological Sciences Research Council BB/E009662/1Biotechnology and Biological Sciences Research Council BB/I007857/1Biotechnology and Biological Sciences Research Council BB/J004588/1Biotechnology and Biological Sciences Research Council BBS/E/J/000CA344European Research Council 233039NCATS NIH HHS UL1 TR000430
6 · The paper itself

Abstract

Relating molecular variation to phenotypic diversity is a central goal in evolutionary biology. In Arabidopsis thaliana, FLOWERING LOCUS C (FLC) is a major determinant of variation in vernalization--the acceleration of flowering by prolonged cold. Here, through analysis of 1307 A. thaliana accessions, we identify five predominant FLC haplotypes defined by noncoding sequence variation. Genetic and transgenic experiments show that they are functionally distinct, varying in FLC expression level and rate of epigenetic silencing. Allelic heterogeneity at this single locus accounts for a large proportion of natural variation in vernalization that contributes to adaptation of A. thaliana.

Indexed as

Gene Expression Regulation, PlantGenetic VariationAdaptation, PhysiologicalArabidopsisArabidopsis ProteinsEpigenesis, GeneticGene SilencingHaplotypesMADS Domain ProteinsPlants, Genetically ModifiedPolymorphism, Single NucleotideArabidopsis ProteinsAt5g10140 protein, ArabidopsisMADS Domain Proteinsadaptationallelic heterogeneityFLOWERING LOCUS Cnoncoding polymorphismvernalization

Identifiers

PMID25035417
PMCPMC4117938

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.