Evidence map›Paper›PMID 25033455›Full record

ArticlePLoS genetics2014

Knock-in reporter mice demonstrate that DNA repair by non-homologous end joining declines with age.

Amita Vaidya, Zhiyong Mao, Xiao Tian, Brianna Spencer, Andrei Seluanov, Vera Gorbunova

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 72 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
72citing papers in PubMed, 1 pooled it
3.4field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

72 citing papers in PubMed, 1 synthesis or guideline pooled it, 117 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Article
  4. Aging alters DNA structure-induced genetic instability in mice.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Age-dependent cytokine surge in blood precedes cancer diagnosis.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  10. Article
  11. Novel Techniques for Mapping DNA Damage and Repair in the Brain.International journal of molecular sciences · 2024
    Review
  12. Article
  13. The NDR family of kinases: essential regulators of aging.Frontiers in molecular neuroscience · 2024
    Review
  14. Somatic mutation as an explanation for epigenetic aging.bioRxiv : the preprint server for biology · 2023
    Article
  15. Impaired end joining induces cardiac atrophy in a Hutchinson-Gilford progeria mouse model.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  16. Genomic Instability and Epigenetic Changes during Aging.International journal of molecular sciences · 2023
    Review
  17. Article
  18. Ageing in the brain: mechanisms and rejuvenating strategies.Cellular and molecular life sciences : CMLS · 2023
    Review
  19. Article
  20. Biomarkers of aging.Science China. Life sciences · 2023
    Review

12 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Amita VaidyaDepartment of Biology, University of Rochester, Rochester, New York, United States of America.
Zhiyong MaoSchool of Life Sciences and Technology, Tongji University, Yangpu district, Shanghai, China.
Xiao TianDepartment of Biology, University of Rochester, Rochester, New York, United States of America.
Brianna SpencerDepartment of Biology, University of Rochester, Rochester, New York, United States of America.
Andrei SeluanovDepartment of Biology, University of Rochester, Rochester, New York, United States of America.
Vera GorbunovaDepartment of Biology, University of Rochester, Rochester, New York, United States of America.
University of Rochester · USTongji University · CN

Funding

The role of hyaluronan in longevity and cancer resistance of longest-lived rodentP01AG047200 · NIA · UNIVERSITY OF ROCHESTER · PI JAN VIJG · 2014 to 2026
$36.9M
The role of SIRT6 posttranslational modifications in aging and genome stability. Supplement: Testing SIRT6 activators as potential Alzheimer's disease therapy.R01AG027237 · NIA · UNIVERSITY OF ROCHESTER · PI Vera Gorbunova · 2006 to 2026
$6.2M
Comparative Analysis of DNA Break Repair in Short- and Long-Lived Rodent SpeciesR01AG031227 · NIA · UNIVERSITY OF ROCHESTER · PI GORBUNOVA, VERA · 2008 to 2012
$1.6M
NIA NIH HHS AG027237NIA NIH HHS AG031227NIA NIH HHS P01 AG047200NIA NIH HHS R01 AG027237NIA NIH HHS R01 AG031227
6 · The paper itself

Abstract

Accumulation of genome rearrangements is a characteristic of aged tissues. Since genome rearrangements result from faulty repair of DNA double strand breaks (DSBs), we hypothesized that DNA DSB repair becomes less efficient with age. The Non-Homologous End Joining (NHEJ) pathway repairs a majority of DSBs in vertebrates. To examine age-associated changes in NHEJ, we have generated an R26NHEJ mouse model in which a GFP-based NHEJ reporter cassette is knocked-in to the ROSA26 locus. In this model, NHEJ repair of DSBs generated by the site-specific endonuclease, I-SceI, reconstitutes a functional GFP gene. In this system NHEJ efficiency can be compared across tissues of the same mouse and in mice of different age. Using R26NHEJ mice, we found that NHEJ efficiency was higher in the skin, lung, and kidney fibroblasts, and lower in the heart fibroblasts and brain astrocytes. Furthermore, we observed that NHEJ efficiency declined with age. In the 24-month old animals compared to the 5-month old animals, NHEJ efficiency declined 1.8 to 3.8-fold, depending on the tissue, with the strongest decline observed in the skin fibroblasts. The sequence analysis of 300 independent NHEJ repair events showed that, regardless of age, mice utilize microhomology sequences at a significantly higher frequency than expected by chance. Furthermore, the frequency of microhomology-mediated end joining (MMEJ) events increased in the heart and lung fibroblasts of old mice, suggesting that NHEJ becomes more mutagenic with age. In summary, our study provides a versatile mouse model for the analysis of NHEJ in a wide range of tissues and demonstrates that DNA repair by NHEJ declines with age in mice, which could provide a mechanism for age-related genomic instability and increased cancer incidence with age.

Indexed as

DNA Breaks, Double-StrandedAgingAnimalsBase SequenceDNA-Binding ProteinsDNA DamageDNA End-Joining RepairDNA RepairFibroblastsGene Knock-In TechniquesGenes, ReporterGreen Fluorescent ProteinsHumansMiceRecombination, GeneticDNA-Binding ProteinsGreen Fluorescent Proteins

Identifiers

PMID25033455
PMCPMC4102425
OpenAlexW2018179845

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.