ArticlePloS one2014
Mapping of quantitative trait locus (QTLs) that contribute to germination and early seedling drought tolerance in the interspecific cross Setaria italica×Setaria viridis.
Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.
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Who cites it
31 citing papers in PubMed, 62 citations in OpenAlex.
- Phenotypic evaluation and mapping QTLs for drought tolerance in an interspecific RIL population from a Setaria italica × Setaria viridis cross.BMC plant biology · 2026Article
- Harnessing Setaria as a Model for CPlants (Basel, Switzerland) · 2025Review
- Physiological and molecular mechanisms of drought adaptation in foxtail millet: insights and future perspectives.Frontiers in plant science · 2025Review
- Article
- GWAS, MWAS and mGWAS provide insights into precision agriculture based on genotype-dependent microbial effects in foxtail millet.Nature communications · 2022Article
- Multi-omics intervention inFrontiers in plant science · 2022Review
- Isolation and identification ofFrontiers in plant science · 2022Article
- iTRAQ based protein profile analysis revealed key proteins involved in regulation of drought-tolerance during seed germination in Adzuki bean.Scientific reports · 2021Article
- Response of Multiple Tissues to Drought Revealed by a Weighted Gene Co-Expression Network Analysis in Foxtail Millet [Frontiers in plant science · 2021Article
- QTL mapping of yield component traits on bin map generated from resequencing a RIL population of foxtail millet (Setaria italica).BMC genomics · 2020Article
- Latent Space Phenotyping: Automatic Image-Based Phenotyping for Treatment Studies.Plant phenomics (Washington, D.C.) · 2020Article
- QTL Mapping for Seed Germination Response to Drought Stress inFrontiers in plant science · 2020Article
- Barnyard Millet for Food and Nutritional Security: Current Status and Future Research Direction.Frontiers in genetics · 2020Review
- Analysis of bHLH genes from foxtail millet (Setaria italica) and their potential relevance to drought stress.PloS one · 2018Article
- Domestication and Improvement in the Model C4 Grass, Setaria.Frontiers in plant science · 2018Review
- Neural Net Classification Combined With Movement Analysis to EvaluateFrontiers in plant science · 2018Article
- Genome-Wide Association Mapping of Major Root Length QTLs Under PEG Induced Water Stress in Wheat.Frontiers in plant science · 2018Article
- Detection of genomic loci associated with chromosomal recombination using high-density linkage mapping in Setaria.Scientific reports · 2017Article
- Genotype-specific physiological and transcriptomic responses to drought stress in Setaria italica (an emerging model for Panicoideae grasses).Scientific reports · 2017Article
- Identification of QTLs for 14 Agronomically Important Traits inG3 (Bethesda, Md.) · 2017Article
Corrections and comments
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Authors and funding
11 authors at 4 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Drought tolerance is an important breeding target for enhancing the yields of grain crop species in arid and semi-arid regions of the world. Two species of Setaria, domesticated foxtail millet (S. italica) and its wild ancestor green foxtail (S. viridis) are becoming widely adopted as models for functional genomics studies in the Panicoid grasses. In this study, the genomic regions controlling germination and early seedling drought tolerance in Setaria were identified using 190 F7 lines derived from a cross between Yugu1, a S. italica cultivar developed in China, and a wild S. viridis genotype collected from Uzbekistan. Quantitative trait loci were identified which contribute to a number of traits including promptness index, radical root length, coleoptile length and lateral root number at germinating stage and seedling survival rate was characterized by the ability of desiccated seedlings to revive after rehydration. A genetic map with 128 SSR markers which spans 1293.9 cM with an average of 14 markers per linkage group of the 9 linkage groups was constructed. A total of eighteen QTLs were detected which included nine that explained over 10% of the phenotypic variance for a given trait. Both the wild green foxtail genotype and the foxtail millet cultivar contributed the favorite alleles for traits detected in this trial, indicating that wild Setaria viridis populations may serve as a reservoir for novel stress tolerance alleles which could be employed in foxtail millet breeding.
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