Evidence map›Paper›PMID 25032698›Full record

ArticlePLoS pathogens2014

Peptidoglycan recognition proteins kill bacteria by inducing oxidative, thiol, and metal stress.

Des Raj Kashyap, Annemarie Rompca, Ahmed Gaballa, John D Helmann, Jefferson Chan, Christopher J Chang, Iztok Hozo, Dipika Gupta, Roman Dziarski

Abstract read
In one paragraph

Article in PLoS pathogens, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 45 papers.

0numbers the graph read from it
0cells of the map it votes in
45citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

45 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Des Raj KashyapIndiana University School of Medicine-Northwest, Gary, Indiana, United States of America.
Annemarie RompcaIndiana University School of Medicine-Northwest, Gary, Indiana, United States of America.
Ahmed GaballaDepartment of Microbiology, Cornell University, Ithaca, New York, United States of America.
John D HelmannDepartment of Microbiology, Cornell University, Ithaca, New York, United States of America.
Jefferson ChanDepartments of Chemistry and Molecular and Cell Biology and the Howard Hughes Medical Institute, University of California, Berkeley, Berkeley, California, United States of America.
Christopher J ChangDepartments of Chemistry and Molecular and Cell Biology and the Howard Hughes Medical Institute, University of California, Berkeley, Berkeley, California, United States of America.
Iztok HozoDepartment of Mathematics, Indiana University Northwest, Gary, Indiana, United States of America.
Dipika GuptaIndiana University School of Medicine-Northwest, Gary, Indiana, United States of America.
Roman DziarskiIndiana University School of Medicine-Northwest, Gary, Indiana, United States of America.

Funding

Molecular Imaging Probes To Study Redox BiologyR01GM079465 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI Christopher J. Chang · 2006 to 2026
$7.8M
STRUCTURAL STUDIES OF BACILLUS SUBTILIS SIGMA FACTORSR01GM047446 · NIGMS · CORNELL UNIVERSITY ITHACA · PI HELMANN, JOHN D · 1992 to 2016
$6.7M
MECHANISM OF PATHOGENIC ACTIVITY OF PEPTIDOGLYCANR01AI028797 · NIAID · INDIANA UNIV-PURDUE UNIV AT INDIANAPOLIS · PI DZIARSKI, ROMAN · 1992 to 2012
$4.0M
Mechanism of antibacterial activity of peptidoglycan recognition proteinsR01AI073290 · NIAID · INDIANA UNIVERSITY INDIANAPOLIS · PI DZIARSKI, ROMAN · 2008 to 2011
$1.5M
Howard Hughes Medical InstituteNIAID NIH HHS AI028797NIAID NIH HHS AI073290NIAID NIH HHS R01 AI028797NIAID NIH HHS R01 AI073290NIGMS NIH HHS GM047446NIGMS NIH HHS GM079465NIGMS NIH HHS R01 GM047446NIGMS NIH HHS R01 GM079465
6 · The paper itself

Abstract

Mammalian Peptidoglycan Recognition Proteins (PGRPs) are a family of evolutionary conserved bactericidal innate immunity proteins, but the mechanism through which they kill bacteria is unclear. We previously proposed that PGRPs are bactericidal due to induction of reactive oxygen species (ROS), a mechanism of killing that was also postulated, and later refuted, for several bactericidal antibiotics. Here, using whole genome expression arrays, qRT-PCR, and biochemical tests we show that in both Escherichia coli and Bacillus subtilis PGRPs induce a transcriptomic signature characteristic of oxidative stress, as well as correlated biochemical changes. However, induction of ROS was required, but not sufficient for PGRP killing. PGRPs also induced depletion of intracellular thiols and increased cytosolic concentrations of zinc and copper, as evidenced by transcriptome changes and supported by direct measurements. Depletion of thiols and elevated concentrations of metals were also required, but by themselves not sufficient, for bacterial killing. Chemical treatment studies demonstrated that efficient bacterial killing can be recapitulated only by the simultaneous addition of agents leading to production of ROS, depletion of thiols, and elevation of intracellular metal concentrations. These results identify a novel mechanism of bacterial killing by innate immunity proteins, which depends on synergistic effect of oxidative, thiol, and metal stress and differs from bacterial killing by antibiotics. These results offer potential targets for developing new antibacterial agents that would kill antibiotic-resistant bacteria.

Indexed as

Gene Expression Regulation, BacterialOxidative StressBacillus subtilisCarrier ProteinsEscherichia coliHumansMetalsReactive Oxygen SpeciesSulfhydryl CompoundsCarrier ProteinsMetalspeptidoglycan recognition proteinReactive Oxygen SpeciesSulfhydryl Compounds

Identifiers

PMID25032698
PMCPMC4102600

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.