Evidence map›Paper›PMID 25032071›Full record

ArticleExperimental hematology & oncology2014

Modelling of a genetically diverse evolution of Systemic Mastocytosis with Chronic Myelomonocytic Leukemia (SM-CMML) by Next Generation Sequencing.

Markus Rechsteiner, Rouven Müller, Tanja Reineke, Jeroen Goede, Annette Bohnert, Qing Zhong, Markus G Manz, Holger Moch, Peter J Wild, Dieter R Zimmermann and 1 more

Open access · goldAbstract read
In one paragraph

Article in Experimental hematology & oncology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.4field-weighted citation impact, top 37% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 5 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 1 country.

Markus RechsteinerInstitute of Surgical Pathology, University Hospital Zurich, Zurich, Switzerland.
Rouven MüllerClinics for Hematology, University Hospital Zurich, Zurich, Switzerland.
Tanja ReinekeInstitute of Surgical Pathology, University Hospital Zurich, Zurich, Switzerland.
Jeroen GoedeClinics for Hematology, University Hospital Zurich, Zurich, Switzerland.
Annette BohnertInstitute of Surgical Pathology, University Hospital Zurich, Zurich, Switzerland.
Qing ZhongInstitute of Surgical Pathology, University Hospital Zurich, Zurich, Switzerland.
Markus G ManzClinics for Hematology, University Hospital Zurich, Zurich, Switzerland.
Holger MochInstitute of Surgical Pathology, University Hospital Zurich, Zurich, Switzerland.
Peter J WildInstitute of Surgical Pathology, University Hospital Zurich, Zurich, Switzerland.
Dieter R ZimmermannInstitute of Surgical Pathology, University Hospital Zurich, Zurich, Switzerland.
Marianne TinguelyInstitute of Surgical Pathology, University Hospital Zurich, Zurich, Switzerland ; Kempf and Pfaltz, Histological Diagnostics, Seminarstr. 1, 8042 Zurich, Switzerland.
University Hospital of Zurich · CHCenter for Pediatric Endocrinology Zurich · CH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundSystemic mastocytosis (SM) is a heterogenous, clonal mast cell (MC) proliferation, rarely associated with clonal hematologic non-mast cell lineage disease (SM-AHNMD). KIT (D816V) is regarded as driver-mutation in SM-AHNMD.

methodsDNA isolated from peripheral blood (PB) of an SM-CMML patient was investigated with targeted next generation sequencing. Variants were verified by Sanger sequencing and further characterized in the SM part of the bone marrow trephine (BMT), normal tissue, and FACS sorted PB cell subpopulations.

findingsLow coverage deep-sequencing (mean 10x) on a GS 454 Junior revealed two as yet unreported SNVs (CBFA2T3 and CLTCL1), both germ-line mutations. High coverage (mean 1674x) targeted re-sequencing on an Ion Proton revealed 177 variants in coding regions. Excluding SNPs, the final list comprised 11 variants. Among these, TET2 (p.Thr1027fs, p.Cys1263Ser) and RUNX1 (p.Asn109Ser) were identified in in the peripheral blood and the SM part of BMT, but not in normal tissue. Furthermore, Sanger sequencing of PB cells revealed similar signal intensities for both TET2 mutations in FACS sorted CD34+ precursor cells and CD16+ granulocytes comparable to signals in the SM part of BMT. In contrast, RUNX1 exhibited a double intensity in CD34+ cells compared to the SM part of BMT and a homozygous variant signal in granulocytes. Both TET2 and RUNX1 mutations were not detectable in B- and T-cells.

conclusionWe present a heterozygous triple-mutation pattern (KIT, TET2, RUNX1) in mast cells (SM disease part) with additional LOH of RUNX1 in granulocytes (CMML disease part). These identified mutations allow a more detailed insight into a multistep pathogenesis which suggests a common tumor progenitor in SM-CMML.

Indexed as

Chronic myelomonocytic leukemiac-KIT mutationNext Generation SequencingRUNX1 mutationSM-CMMLSystemic mastocytosisTET-2 mutation

Identifiers

PMID25032071
PMCPMC4100747
OpenAlexW2143360459

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.