Evidence map›Paper›PMID 25030899›Full record

ArticleNucleic acids research2014

Embryonic stem cell-specific microRNAs contribute to pluripotency by inhibiting regulators of multiple differentiation pathways.

Andreas J Gruber, William A Grandy, Piotr J Balwierz, Yoana A Dimitrova, Mikhail Pachkov, Constance Ciaudo, Erik van Nimwegen, Mihaela Zavolan

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 36 citations in OpenAlex.

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  13. Involvement of posttranscriptional regulation ofProceedings of the National Academy of Sciences of the United States of America · 2017
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  17. FEBS open bio · 2017
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Andreas J GruberBiozentrum, University of Basel, Klingelberstrasse 50-70, CH-4056 Basel, Switzerland.
William A GrandyBiozentrum, University of Basel, Klingelberstrasse 50-70, CH-4056 Basel, Switzerland.
Piotr J BalwierzBiozentrum, University of Basel, Klingelberstrasse 50-70, CH-4056 Basel, Switzerland.
Yoana A DimitrovaBiozentrum, University of Basel, Klingelberstrasse 50-70, CH-4056 Basel, Switzerland.
Mikhail PachkovBiozentrum, University of Basel, Klingelberstrasse 50-70, CH-4056 Basel, Switzerland.
Constance CiaudoETH Zürich, Otto-Stern-Weg 7, CH-8093 Zürich, Switzerland.
Erik van NimwegenBiozentrum, University of Basel, Klingelberstrasse 50-70, CH-4056 Basel, Switzerland.
Mihaela ZavolanBiozentrum, University of Basel, Klingelberstrasse 50-70, CH-4056 Basel, Switzerland mihaela.zavolan@unibas.ch.
University of Basel · CHETH Zurich · CH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The findings that microRNAs (miRNAs) are essential for early development in many species and that embryonic miRNAs can reprogram somatic cells into induced pluripotent stem cells suggest that these miRNAs act directly on transcriptional and chromatin regulators of pluripotency. To elucidate the transcription regulatory networks immediately downstream of embryonic miRNAs, we extended the motif activity response analysis approach that infers the regulatory impact of both transcription factors (TFs) and miRNAs from genome-wide expression states. Applying this approach to multiple experimental data sets generated from mouse embryonic stem cells (ESCs) that did or did not express miRNAs of the ESC-specific miR-290-295 cluster, we identified multiple TFs that are direct miRNA targets, some of which are known to be active during cell differentiation. Our results provide new insights into the transcription regulatory network downstream of ESC-specific miRNAs, indicating that these miRNAs act on cell cycle and chromatin regulators at several levels and downregulate TFs that are involved in the innate immune response.

Indexed as

Gene Regulatory NetworksAnimalsCell CycleCell DifferentiationEmbryonic Stem CellsEpigenesis, GeneticInterferon Regulatory Factor-2MiceMicroRNAsPluripotent Stem CellsTranscription Factor RelAInterferon Regulatory Factor-2MicroRNAsTranscription Factor RelA

Identifiers

PMID25030899
PMCPMC4132708
OpenAlexW2117914237

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.