Evidence map›Paper›PMID 25030430›Full record

ArticleGenes and immunity2014

Genome-wide association study of hepatitis C virus- and cryoglobulin-related vasculitis.

A L Zignego, G L Wojcik, P Cacoub, M Visentini, M Casato, A Mangia, R Latanich, E D Charles, L Gragnani, B Terrier and 9 more

Open access · bronzeAbstract read
In one paragraph

Article in Genes and immunity, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
4.6field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 66 citations in OpenAlex.

  1. Trial
  2. Review
  3. Review
  4. Article
  5. Article
  6. Article
  7. Proteomic Profiling of Cryoglobulinemia.Frontiers in immunology · 2022
    Article
  8. Article
  9. The association between hepatitis C virus infection and renal function.Journal of the Chinese Medical Association : JCMA · 2021
    Article
  10. Article
  11. Review
  12. Hepatitis C virus and the kidney.Nature reviews. Nephrology · 2019
    Review
  13. Review
  14. Genetic susceptibility to infectious diseases: Current status and future perspectives from genome-wide approaches.Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases · 2018
    Review
  15. Review
  16. Review
  17. Review
  18. Article
  19. Review
  20. Vasculitic syndromes in hepatitis C virus: A review.Journal of advanced research · 2017
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 10 institutions in 4 countries.

A L ZignegoUniversity of Florence, Florence, Italy.
G L WojcikDepartment of Epidemiology, Johns Hopkins School of Public Health, Baltimore, MD, USA.
P Cacoub1] Sorbonne Universités, UPMC Univ Paris 06, UMR 7211, and Inflammation-Immunopathology-Biotherapy Department (DHU i2B), Paris, France [2] INSERM, UMR_S 959, Paris, France [3] CNRS, FRE3632, Paris, France [4] AP-HP, Group Hospitalier Pitié-Salpêtrière, Department of Internal Medicine and Clinical Immunology, Paris, France.
M VisentiniSapienza, University of Rome, Rome, Italy.
M CasatoSapienza, University of Rome, Rome, Italy.
A MangiaLiver Unity, Casa Sollievo della Sofferenza Hospital, San Giovanni Rotondo, Italy.
R LatanichDepartment of Medicine, Johns Hopkins Medical Institution, Baltimore, MD, USA.
E D CharlesRockefeller University, New York City, NY, USA.
L GragnaniUniversity of Florence, Florence, Italy.
B TerrierSorbonne Universités, UPMC Univ Paris 06, UMR 7211, and Inflammation-Immunopathology-Biotherapy Department (DHU i2B), Paris, France.
V PiazzolaLiver Unity, Casa Sollievo della Sofferenza Hospital, San Giovanni Rotondo, Italy.
L B DustinRockefeller University, New York City, NY, USA.
S I KhakooUniversity of Southampton, Southampton, UK.
M P BuschBlood Systems Research Institute, San Francisco, CA, USA.
G M LauerDepartment of Medicine, Massachusetts General Hospital, Boston, MA, USA.
A Y KimDepartment of Medicine, Massachusetts General Hospital, Boston, MA, USA.
L AlricToulouse III University, CHU Purpan Hospital, Toulouse, France.
D L ThomasDepartment of Medicine, Johns Hopkins Medical Institution, Baltimore, MD, USA.
P DuggalDepartment of Epidemiology, Johns Hopkins School of Public Health, Baltimore, MD, USA.
Johns Hopkins University · USCasa Sollievo della Sofferenza · ITMassachusetts General Hospital · USRockefeller University · USSapienza University of Rome · ITUniversité Paris Cité · FRUniversity of Florence · ITBlood Systems Research Institute · USHôpital Purpan · FRUniversity of Southampton · GB

Funding

TRANSFORMING TRANSLATIONAL SCIENCE AND EDUCATION TO BENEFIT HUMAN HEALTHUL1RR024143 · NCRR · ROCKEFELLER UNIVERSITY · PI COLLER, BARRY · 2006 to 2011
$49.1M
Virology CoreU19AI082630 · NIAID · MASSACHUSETTS GENERAL HOSPITAL · PI RAYMOND T CHUNG, GEORG Michael LAUER · 2009 to 2026
$48.1M
UCSF Liver Core CenterP30DK026743 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Holger Willenbring · 1986 to 2026
$30.7M
Transforming Translational Science and Education to Benefit Human HealthUL1TR000043 · NCATS · ROCKEFELLER UNIVERSITY · PI COLLER, BARRY · 2012 to 2015
$26.8M
HIV and Hepatitis C Pathogenesis & The Human GenomeR01DA013324 · NIDA · JOHNS HOPKINS UNIVERSITY · PI THOMAS, DAVID L · 1999 to 2018
$12.0M
The role of NK cells during acute HCV infection and antiviral therapyU19AI066345 · NIAID · MASSACHUSETTS GENERAL HOSPITAL · PI LAUER, GEORG MICHAEL · 2005 to 2014
$8.5M
Immune complexes: Origins and effects in HCV infectionR01AI060561 · NIAID · UNIVERSITY OF OXFORD · PI DUSTIN, LYNN B · 2003 to 2015
$3.9M
Discovery and Assessment of Genetic Determinants of HCV and HIV ControlR01DA033541 · NIDA · MASSACHUSETTS GENERAL HOSPITAL · PI CHUNG, RAYMOND T, KIM, ARTHUR Y · 2011 to 2015
$3.4M
Natural history of acute and chronic HCV in blood donorsR01HL076902 · NHLBI · VITALANT · PI BUSCH, MICHAEL PAUL · 2003 to 2008
$1.8M
The Pathogenesis of Autoimmunity in Hepatitis C Virus InfectionK08AI075031 · NIAID · ROCKEFELLER UNIVERSITY · PI CHARLES, EDGAR D · 2008 to 2012
$802k
NCATS NIH HHS UL1 TR000043NCRR NIH HHS UL1 RR024143NHLBI NIH HHS R01 HL076902NHLBI NIH HHS R01HL076902NIAID NIH HHS AI066345NIAID NIH HHS AI082630NIAID NIH HHS K08 AI075031NIAID NIH HHS K08AI075031NIAID NIH HHS R01 AI060561NIAID NIH HHS U19 AI066345NIAID NIH HHS U19 AI082630NIDA NIH HHS DA033541NIDA NIH HHS R01 DA013324NIDA NIH HHS R01DA013324NIDA NIH HHS R01 DA033541NIDDK NIH HHS P30 DK026743Wellcome TrustWellcome Trust WT076991MA
6 · The paper itself

Abstract

The host genetic basis of mixed cryoglobulin vasculitis is not well understood and has not been studied in large cohorts. A genome-wide association study was conducted among 356 hepatitis C virus (HCV) RNA-positive individuals with cryoglobulin-related vasculitis and 447 ethnically matched, HCV RNA-positive controls. All cases had both serum cryoglobulins and a vasculitis syndrome. A total of 899 641 markers from the Illumina HumanOmni1-Quad chip were analyzed using logistic regression adjusted for sex, as well as genetically determined ancestry. Replication of select single-nucleotide polymorphisms (SNPs) was conducted using 91 cases and 180 controls, adjusting for sex and country of origin. The most significant associations were identified on chromosome 6 near the NOTCH4 and MHC class II genes. A genome-wide significant association was detected on chromosome 6 at SNP rs9461776 (odds ratio=2.16, P=1.16E-07) between HLA-DRB1 and DQA1: this association was further replicated in additional independent samples (meta-analysis P=7.1 × 10(-9)). A genome-wide significant association with cryoglobulin-related vasculitis was identified with SNPs near NOTCH4 and MHC Class II genes. The two regions are correlated and it is difficult to disentangle which gene is responsible for the association with mixed cryoglobulinemia vasculitis in this extended major histocompatibility complex region.

Indexed as

Polymorphism, Single NucleotideCase-Control StudiesChromosomes, Human, Pair 6CryoglobulinemiaCryoglobulinsFemaleGenes, MHC Class IIGenome-Wide Association StudyHepatitis CHumansMaleProto-Oncogene ProteinsReceptor, Notch4Receptors, NotchVasculitisCryoglobulinsNOTCH4 protein, humanProto-Oncogene ProteinsReceptor, Notch4Receptors, Notch

Identifiers

PMID25030430
PMCPMC4208981
OpenAlexW2019864920

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.