Evidence map›Paper›PMID 25028881›Full record

ArticleBiophysical journal2014

Structure and dynamics of a compact state of a multidomain protein, the mercuric ion reductase.

Liang Hong, Melissa A Sharp, Simón Poblete, Ralf Biehl, Michaela Zamponi, Noemi Szekely, Marie-Sousai Appavou, Roland G Winkler, Rachel E Nauss, Alexander Johs and 9 more

Abstract read
In one paragraph

Article in Biophysical journal, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors.

Liang HongCenter for Molecular Biophysics, Oak Ridge National Laboratory, Tennessee; Department of Biochemistry and Cellular and Molecular Biology, University of Tennessee, Knoxville, Tennessee; Department of Physics and Institute of Natural Sciences, Shanghai Jiao Tong University, Shanghai, China.
Melissa A SharpEuropean Spallation Source ESS AB, Lund, Sweden; Jülich Center of Neutron Science, Outstation at the Spallation Neutron Source (SNS), Oak Ridge, Tennessee.
Simón PobleteInstitute of Complex Systems & Institute for Advanced Simulation, Forschungszentrum Jülich, Jülich, Germany.
Ralf BiehlJülich Center of Neutron Science & Institute of Complex Systems, Forschungszentrum Jülich, Jülich, Germany.
Michaela ZamponiJülich Centre for Neutron Science JCNS, Forschungszentrum Jülich GmbH Outstation at MLZ, Garching, Germany.
Noemi SzekelyJülich Centre for Neutron Science JCNS, Forschungszentrum Jülich GmbH Outstation at MLZ, Garching, Germany.
Marie-Sousai AppavouJülich Centre for Neutron Science JCNS, Forschungszentrum Jülich GmbH Outstation at MLZ, Garching, Germany.
Roland G WinklerInstitute of Complex Systems & Institute for Advanced Simulation, Forschungszentrum Jülich, Jülich, Germany.
Rachel E NaussDepartment of Pharmaceutical Chemistry, University of California San Francisco, San Francisco, California.
Alexander JohsEnvironmental Sciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee.
Jerry M ParksCenter for Molecular Biophysics, Oak Ridge National Laboratory, Tennessee.
Zheng YiCenter for Molecular Biophysics, Oak Ridge National Laboratory, Tennessee; Department of Biochemistry and Cellular and Molecular Biology, University of Tennessee, Knoxville, Tennessee.
Xiaolin ChengCenter for Molecular Biophysics, Oak Ridge National Laboratory, Tennessee.
Liyuan LiangEnvironmental Sciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee.
Michael OhlJülich Centre for Neutron Science JCNS, Forschungszentrum Jülich GmbH Outstation at MLZ, Garching, Germany. Electronic address: m.ohl@fz-juelich.de.
Susan M MillerDepartment of Pharmaceutical Chemistry, University of California San Francisco, San Francisco, California. Electronic address: smiller@cgl.ucsf.edu.
Dieter RichterJülich Center of Neutron Science & Institute of Complex Systems, Forschungszentrum Jülich, Jülich, Germany. Electronic address: d.richter@fz-juelich.de.
Gerhard GompperInstitute of Complex Systems & Institute for Advanced Simulation, Forschungszentrum Jülich, Jülich, Germany. Electronic address: g.gompper@fz-juelich.de.
Jeremy C SmithCenter for Molecular Biophysics, Oak Ridge National Laboratory, Tennessee; Department of Biochemistry and Cellular and Molecular Biology, University of Tennessee, Knoxville, Tennessee. Electronic address: smithjc@ornl.gov.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The functional efficacy of colocalized, linked protein domains is dependent on linker flexibility and system compaction. However, the detailed characterization of these properties in aqueous solution presents an enduring challenge. Here, we employ a novel, to our knowledge, combination of complementary techniques, including small-angle neutron scattering, neutron spin-echo spectroscopy, and all-atom molecular dynamics and coarse-grained simulation, to identify and characterize in detail the structure and dynamics of a compact form of mercuric ion reductase (MerA), an enzyme central to bacterial mercury resistance. MerA possesses metallochaperone-like N-terminal domains (NmerA) tethered to its catalytic core domain by linkers. The NmerA domains are found to interact principally through electrostatic interactions with the core, leashed by the linkers so as to subdiffuse on the surface over an area close to the core C-terminal Hg(II)-binding cysteines. How this compact, dynamical arrangement may facilitate delivery of Hg(II) from NmerA to the core domain is discussed.

Indexed as

Amino Acid SequenceCatalytic DomainMolecular Sequence DataNeutron DiffractionOxidoreductasesProtein BindingScattering, Small AngleStatic Electricitymercuric reductaseOxidoreductases

Identifiers

PMID25028881
PMCPMC4104034

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.