Evidence map›Paper›PMID 25028517›Full record

ArticleThe Journal of biological chemistry2014

The three Mycobacterium tuberculosis antigen 85 isoforms have unique substrates and activities determined by non-active site regions.

Keriann M Backus, Michael A Dolan, Conor S Barry, Maju Joe, Peter McPhie, Helena I M Boshoff, Todd L Lowary, Benjamin G Davis, Clifton E Barry

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 41 papers.

0numbers the graph read from it
0cells of the map it votes in
41citing papers in PubMed
3.1field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

41 citing papers in PubMed, 68 citations in OpenAlex.

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  9. B Cell and Antibody Responses in Bovine Tuberculosis.Antibodies (Basel, Switzerland) · 2024
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  11. Frontiers in immunology · 2024
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  12. Review
  13. Molecular Mechanisms of MmpL3 Function and Inhibition.Microbial drug resistance (Larchmont, N.Y.) · 2023
    Review
  14. Article
  15. Proton transfer activity of the reconstitutedProceedings of the National Academy of Sciences of the United States of America · 2022
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  16. Potential therapeutic targets fromRSC medicinal chemistry · 2022
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  17. Proteome characterization of the culture supernatant ofBiochemistry and biophysics reports · 2021
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  18. Article
  19. Article
  20. Targeting MmpL3 for anti-tuberculosis drug development.Biochemical Society transactions · 2020
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 6 countries.

Keriann M BackusFrom the Tuberculosis Research Section, Laboratory of Clinical Infectious Diseases, and the Department of Chemistry, University of Oxford, Chemistry Research Laboratory, Oxford OX1 3TA, United Kingdom.
Michael A Dolanthe Bioinformatics and Computational Biosciences Branch, NIAID, National Institutes of Health, Bethesda, Maryland 20892.
Conor S Barrythe Department of Chemistry, University of Oxford, Chemistry Research Laboratory, Oxford OX1 3TA, United Kingdom.
Maju Joethe Alberta Glycomics Centre and Department of Chemistry, University of Alberta, Edmonton, Alberta T6G 2G2, Canada, and.
Peter McPhiethe Laboratory of Biochemistry and Genetics, NIDDK, National Institutes of Health, Bethesda, Maryland 20892.
Helena I M BoshoffFrom the Tuberculosis Research Section, Laboratory of Clinical Infectious Diseases, and.
Todd L Lowarythe Alberta Glycomics Centre and Department of Chemistry, University of Alberta, Edmonton, Alberta T6G 2G2, Canada, and.
Benjamin G Davisthe Department of Chemistry, University of Oxford, Chemistry Research Laboratory, Oxford OX1 3TA, United Kingdom, Ben.Davis@chem.ox.ac.uk.
Clifton E BarryFrom the Tuberculosis Research Section, Laboratory of Clinical Infectious Diseases, and cbarry@niaid.nih.gov.
University of Oxford · GBNational Institutes of Health · USTuBerculosis Vaccine Initiative · NL

Funding

Exploring the metabolism of non-replicating and drug-resistant TBZIAAI000783 · NIAID · NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES · PI BARRY, CLIFTON · 2009 to 2017
$8.2M
Resource for Biocomputing Visualization and InformaticsP41GM103311 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI FERRIN, THOMAS E · 2012 to 2017
$8.2M
Thermodynamic and kinetic studies of protein structure and enzymic mechanismsZIADK024964 · NIDDK · NATIONAL INSTITUTE OF DIABETES AND DIGESTIVE AND KIDNEY DISEASES · PI WICKNER, REED B. · 2009 to 2016
$1.8M
Biotechnology and Biological Sciences Research Council BB/E004350/1Biotechnology and Biological Sciences Research Council EGA17763Intramural NIH HHS ZIA DK024964NIAID NIH HHS HHSN266200400091CNIGMS NIH HHS 9P41GM103311NIGMS NIH HHS P41 GM103311
6 · The paper itself

Abstract

The three isoforms of antigen 85 (A, B, and C) are the most abundant secreted mycobacterial proteins and catalyze transesterification reactions that synthesize mycolated arabinogalactan, trehalose monomycolate (TMM), and trehalose dimycolate (TDM), important constituents of the outermost layer of the cellular envelope of Mycobacterium tuberculosis. These three enzymes are nearly identical at the active site and have therefore been postulated to exist to evade host immunity. Distal to the active site is a second putative carbohydrate-binding site of lower homology. Mutagenesis of the three isoforms at this second site affected both substrate selectivity and overall catalytic activity in vitro. Using synthetic and natural substrates, we show that these three enzymes exhibit unique selectivity; antigen 85A more efficiently mycolates TMM to form TDM, whereas C (and to a lesser extent B) has a higher rate of activity using free trehalose to form TMM. This difference in substrate selectivity extends to the hexasaccharide fragment of cell wall arabinan. Mutation of secondary site residues from the most active isoform (C) into those present in A or B partially interconverts this substrate selectivity. These experiments in combination with molecular dynamics simulations reveal that differences in the N-terminal helix α9, the adjacent Pro(216)-Phe(228) loop, and helix α5 are the likely cause of changes in activity and substrate selectivity. These differences explain the existence of three isoforms and will allow for future work in developing inhibitors.

Indexed as

AcyltransferasesAmino Acid SequenceAntigens, BacterialBacterial ProteinsBinding SitesBiocatalysisCarbohydrate SequenceCatalytic DomainCell WallCord FactorsGalactansMolecular Dynamics SimulationMolecular Sequence DataMutationMycobacterium tuberculosisPolysaccharidesAcyltransferasesantigen 85A, Mycobacterium tuberculosisantigen 85B, Mycobacterium tuberculosisantigen 85C, Mycobacterium tuberculosisAntigens, BacterialarabanarabinogalactanBacterial ProteinsCord FactorsGalactansPolysaccharidestrehalose monomycolateAntigen 85Cell WallEnzyme MechanismGlycolipidMolecular DynamicsMycolyl TransferaseTrehaloseTuberculosis

Identifiers

PMID25028517
PMCPMC4155671
OpenAlexW1981058570

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.