Evidence map›Paper›PMID 25028509›Full record

ArticleThe Journal of biological chemistry2014

A mitogen-activated protein kinase/extracellular signal-regulated kinase kinase (MEK)-dependent transcriptional program controls activation of the early growth response 1 (EGR1) gene during amino acid limitation.

Jixiu Shan, Mukundh N Balasubramanian, William Donelan, Lingchen Fu, Jaclyn Hayner, Maria-Cecilia Lopez, Henry V Baker, Michael S Kilberg

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
1.4field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 32 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Article
  5. Article
  6. Long Noncoding RNACirculation · 2021
    Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Aminoacyl-tRNA synthetase inhibition activates a pathway that branches from the canonical amino acid response in mammalian cells.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  12. Article
  13. Article
  14. Article
  15. Transcriptional Landscape of PARs in Epithelial Malignancies.International journal of molecular sciences · 2018
    Review
  16. Effects of the combination of AsOncoTargets and therapy · 2018
    Article
  17. Article
  18. GCN2 is a potential prognostic biomarker for human papillary renal cell carcinoma.Cancer biomarkers : section A of Disease markers · 2018
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Jixiu ShanFrom the Department of Biochemistry and Molecular Biology, Shands Cancer Center and Center for Nutritional Sciences and.
Mukundh N BalasubramanianFrom the Department of Biochemistry and Molecular Biology, Shands Cancer Center and Center for Nutritional Sciences and.
William DonelanFrom the Department of Biochemistry and Molecular Biology, Shands Cancer Center and Center for Nutritional Sciences and.
Lingchen FuFrom the Department of Biochemistry and Molecular Biology, Shands Cancer Center and Center for Nutritional Sciences and.
Jaclyn HaynerFrom the Department of Biochemistry and Molecular Biology, Shands Cancer Center and Center for Nutritional Sciences and.
Maria-Cecilia Lopezthe Department of Molecular Genetics and Microbiology, Genetics Institute, University of Florida College of Medicine, Gainesville, Florida 32610.
Henry V Bakerthe Department of Molecular Genetics and Microbiology, Genetics Institute, University of Florida College of Medicine, Gainesville, Florida 32610.
Michael S KilbergFrom the Department of Biochemistry and Molecular Biology, Shands Cancer Center and Center for Nutritional Sciences and mkilberg@ufl.edu.
Center for Cancer Research · USUniversity of Florida · USCentre for Cancer Biology · AU

Funding

Amino Acid Regulation of Alternative SplicingR01DK092062 · NIDDK · UNIVERSITY OF FLORIDA · PI KILBERG, MICHAEL S. · 2011 to 2014
$1.3M
Amino Acid Regulation of the Fos/Jun Transcription FactorsR01DK094729 · NIDDK · UNIVERSITY OF FLORIDA · PI KILBERG, MICHAEL S. · 2011 to 2014
$1.2M
NIDDK NIH HHS DK92062NIDDK NIH HHS DK94729NIDDK NIH HHS R01 DK092062NIDDK NIH HHS R01 DK094729
6 · The paper itself

Abstract

Amino acid (AA) limitation in mammalian cells triggers a collection of signaling cascades jointly referred to as the AA response (AAR). In human HepG2 hepatocellular carcinoma, the early growth response 1 (EGR1) gene was induced by either AA deprivation or endoplasmic reticulum stress. AAR-dependent EGR1 activation was discovered to be independent of the well characterized GCN2-ATF4 pathway and instead dependent on MEK-ERK signaling, one of the MAPK pathways. ChIP showed that constitutively bound ELK1 at the EGR1 proximal promoter region was phosphorylated after AAR activation. Increased p-ELK1 binding was associated with increased de novo recruitment of RNA polymerase II to the EGR1 promoter. EGR1 transcription was not induced in HEK293T cells lacking endogenous MEK activity, but overexpression of exogenous constitutively active MEK in HEK293T cells resulted in increased basal and AAR-induced EGR1 expression. ChIP analysis of the human vascular endothelial growth factor A (VEGF-A) gene, a known EGR1-responsive gene, revealed moderate increases in AAR-induced EGR1 binding within the proximal promoter and highly inducible binding to a site within the first intron. Collectively, these data document a novel AA-activated MEK-ERK-ELK1 signaling mechanism.

Indexed as

Transcription, GeneticAmino AcidsBase SequenceDNA PrimersEarly Growth Response Protein 1Extracellular Signal-Regulated MAP KinasesHEK293 CellsHumansMitogen-Activated Protein KinasesReal-Time Polymerase Chain ReactionAmino AcidsDNA PrimersEarly Growth Response Protein 1EGR1 protein, humanExtracellular Signal-Regulated MAP KinasesMitogen-Activated Protein KinasesAmino AcidAmino Acid ResponseAsparagine SynthetaseATF4Gene TranscriptionHepatocellular CarcinomaHepG2 CellsMitogen-activated Protein Kinase (MAPK)Transcription

Identifiers

PMID25028509
PMCPMC4148889
OpenAlexW1980320422

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.