Evidence map›Paper›PMID 25026433›Full record

ArticleThe journal of physical chemistry. B2014

Hyperfine and nuclear quadrupole tensors of nitrogen donors in the Q(A) site of bacterial reaction centers: correlation of the histidine N(δ) tensors with hydrogen bond strength.

Alexander T Taguchi, Patrick J O'Malley, Colin A Wraight, Sergei A Dikanov

Open access · bronzeAbstract readComparative Study
In one paragraph

Article in The journal of physical chemistry. B, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
1.6field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 19 citations in OpenAlex.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Alexander T TaguchiCenter for Biophysics and Computational Biology, §Department of Biochemistry, and ∥Department of Veterinary Clinical Medicine, University of Illinois at Urbana-Champaign , Urbana, Illinois 61801, United States.
Patrick J O'Malley
Colin A Wraight
Sergei A Dikanov
University of Illinois Urbana-Champaign · US

Funding

INSTITUTIONAL NRSA IN MOLECULAR BIOPHYSICST32GM008276 · NIGMS · UNIVERSITY OF ILLINOIS URBANA-CHAMPAIGN · PI GROSMAN, CLAUDIO F · 1988 to 2013
$4.8M
Structure of reaction intermediates in the bc1 complexR01GM062954 · NIGMS · UNIVERSITY OF ILLINOIS URBANA-CHAMPAIGN · PI DIKANOV, SERGEI A · 2002 to 2010
$2.2M
PULSED X BAND EPR SPECTROMETER FOR BIOMEDICAL RESEARCHS10RR015878 · NCRR · UNIVERSITY OF ILLINOIS URBANA-CHAMPAIGN · PI BELFORD, R LINN · 2001 to 2001
$489k
Multifrequency Pulsed Electron Paramagnetic Resonance Spectrometer For BiomedicalS10RR025438 · NCRR · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI DIKANOV, SERGEI A · 2009 to 2009
$397k
NCRR NIH HHS S10 RR025438NCRR NIH HHS S10-RR025438NCRR NIH HHS S10-RR15878NIGMS NIH HHS 5T32-GM008276NIGMS NIH HHS GM062954NIGMS NIH HHS R01 GM062954NIGMS NIH HHS T32 GM008276
6 · The paper itself

Abstract

X- and Q-band pulsed EPR spectroscopy was applied to study the interaction of the QA site semiquinone (SQA) with nitrogens from the local protein environment in natural abundance (14)N and in (15)N uniformly labeled photosynthetic reaction centers of Rhodobacter sphaeroides. The hyperfine and nuclear quadrupole tensors for His-M219 Nδ and Ala-M260 peptide nitrogen (Np) were estimated through simultaneous simulation of the Q-band (15)N Davies ENDOR, X- and Q-band (14,15)N HYSCORE, and X-band (14)N three-pulse ESEEM spectra, with support from DFT calculations. The hyperfine coupling constants were found to be a((14)N) = 2.3 MHz, T = 0.3 MHz for His-M219 Nδ and a((14)N) = 2.6 MHz, T = 0.3 MHz for Ala-M260 Np. Despite that His-M219 Nδ is established as the stronger of the two H-bond donors, Ala-M260 Np is found to have the larger value of a((14)N). The nuclear quadrupole coupling constants were estimated as e(2)Qq/4h = 0.38 MHz, η = 0.97 and e(2)Qq/4h = 0.74 MHz, η = 0.59 for His-M219 Nδ and Ala-M260 Np, respectively. An analysis of the available data on nuclear quadrupole tensors for imidazole nitrogens found in semiquinone-binding proteins and copper complexes reveals these systems share similar electron occupancies of the protonated nitrogen orbitals. By applying the Townes-Dailey model, developed previously for copper complexes, to the semiquinones, we find the asymmetry parameter η to be a sensitive probe of the histidine Nδ-semiquinone hydrogen bond strength. This is supported by a strong correlation observed between η and the isotropic coupling constant a((14)N) and is consistent with previous computational works and our own semiquinone-histidine model calculations. The empirical relationship presented here for a((14)N) and η will provide an important structural characterization tool in future studies of semiquinone-binding proteins.

Indexed as

Bacterial ProteinsBenzoquinonesComputer SimulationCopperElectronsHistidineHydrogen BondingImidazolesModels, MolecularNitrogenPhotosynthetic Reaction Center Complex ProteinsRhodobacter sphaeroidesSpectrum AnalysisZincBacterial ProteinsBenzoquinonesCopperHistidineImidazolesNitrogenPhotosynthetic Reaction Center Complex Proteinssemiquinone radicalsZinc

Identifiers

PMID25026433
PMCPMC4126732
OpenAlexW1986555286

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.