Evidence map›Paper›PMID 25025832›Full record

ArticleNature communications2014

Genomic analysis reveals selection for Asian genes in European pigs following human-mediated introgression.

Mirte Bosse, Hendrik-Jan Megens, Laurent A F Frantz, Ole Madsen, Greger Larson, Yogesh Paudel, Naomi Duijvesteijn, Barbara Harlizius, Yanick Hagemeijer, Richard P M A Crooijmans and 1 more

Abstract read
In one paragraph

Article in Nature communications, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 118 papers.

0numbers the graph read from it
0cells of the map it votes in
118citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

118 citing papers in PubMed.

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  13. Local Climate Adaptation in Chinese Indigenous Pig Genomes.Animals : an open access journal from MDPI · 2025
    Article
  14. Article
  15. A universally applicable definition for domestication.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  16. Article
  17. Article
  18. Article
  19. Archaeogenomic insights into commensalism and regional variation in pig management in Neolithic northwest Europe.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  20. Article

58 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Mirte BosseAnimal Breeding and Genomics Centre, Wageningen University, Wageningen 6708 WD, The Netherlands.
Hendrik-Jan MegensAnimal Breeding and Genomics Centre, Wageningen University, Wageningen 6708 WD, The Netherlands.
Laurent A F FrantzAnimal Breeding and Genomics Centre, Wageningen University, Wageningen 6708 WD, The Netherlands.
Ole MadsenAnimal Breeding and Genomics Centre, Wageningen University, Wageningen 6708 WD, The Netherlands.
Greger LarsonDurham Evolution and Ancient DNA, Department of Archaeology, Durham University, DH1 3LE Durham, UK.
Yogesh PaudelAnimal Breeding and Genomics Centre, Wageningen University, Wageningen 6708 WD, The Netherlands.
Naomi Duijvesteijn1] Animal Breeding and Genomics Centre, Wageningen University, Wageningen 6708 WD, The Netherlands [2] TOPIGS Research Center IPG, 6640 AA Beuningen, The Netherlands.
Barbara HarliziusTOPIGS Research Center IPG, 6640 AA Beuningen, The Netherlands.
Yanick HagemeijerAnimal Breeding and Genomics Centre, Wageningen University, Wageningen 6708 WD, The Netherlands.
Richard P M A CrooijmansAnimal Breeding and Genomics Centre, Wageningen University, Wageningen 6708 WD, The Netherlands.
Martien A M GroenenAnimal Breeding and Genomics Centre, Wageningen University, Wageningen 6708 WD, The Netherlands.

Funding

European Research Council 249894
6 · The paper itself

Abstract

The independent domestication of local wild boar populations in Asia and Europe about 10,000 years ago led to distinct European and Asian pig breeds, each with very different phenotypic characteristics. During the Industrial Revolution, Chinese breeds were imported to Europe to improve commercial traits in European breeds. Here we demonstrate the presence of introgressed Asian haplotypes in European domestic pigs and selection signatures on some loci in these regions, using whole genome sequence data. The introgression signatures are widespread and the Asian haplotypes are rarely fixed. The Asian introgressed haplotypes are associated with regions harbouring genes involved in meat quality, development and fertility. We identify Asian-derived non-synonymous mutations in the AHR gene that associate with increased litter size in multiple European commercial lines. These findings demonstrate that increased fertility was an important breeding goal for early nineteenth century pig farmers, and that Asian variants of genes related to this trait were preferentially selected during the development of modern European pig breeds.

Indexed as

AnimalsAsiaEuropeFertilityGenomicsHaplotypesHumansSwine

Identifiers

PMID25025832
PMCPMC4225517

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.