Evidence map›Paper›PMID 25023666›Full record

ArticleNature communications2014

The highly conserved domain of unknown function 1792 has a distinct glycosyltransferase fold.

Hua Zhang, Fan Zhu, Tiandi Yang, Lei Ding, Meixian Zhou, Jingzhi Li, Stuart M Haslam, Anne Dell, Heidi Erlandsen, Hui Wu

Open access · bronzeAbstract read
In one paragraph

Article in Nature communications, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
3.1field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed, 77 citations in OpenAlex.

  1. Article
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  8. Exopolysaccharide Biosynthesis inInternational journal of molecular sciences · 2023
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  12. Article
  13. Article
  14. Article
  15. Article
  16. Review
  17. Bacteria-Catalyzed Arginine Glycosylation in Pathogens and Host.Frontiers in cellular and infection microbiology · 2020
    Review
  18. Review
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  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 2 countries.

Hua ZhangDepartments of Pediatric Dentistry, Microbiology, Schools of Dentistry and Medicine, University of Alabama at Birmingham, Birmingham, Alabama 35294, USA.
Fan ZhuDepartments of Pediatric Dentistry, Microbiology, Schools of Dentistry and Medicine, University of Alabama at Birmingham, Birmingham, Alabama 35294, USA.
Tiandi YangDepartment of Life Sciences, Imperial College London, London SW7 2AZ, UK.
Lei DingDepartment of Biochemistry and Molecular Genetics, School of Medicine, University of Alabama at Birmingham, Birmingham, Alabama 35294, USA.
Meixian Zhou1] Departments of Pediatric Dentistry, Microbiology, Schools of Dentistry and Medicine, University of Alabama at Birmingham, Birmingham, Alabama 35294, USA [2].
Jingzhi LiDepartment of Cell Biology, School of Medicine, University of Alabama at Birmingham, Birmingham, Alabama 35294, USA.
Stuart M HaslamDepartment of Life Sciences, Imperial College London, London SW7 2AZ, UK.
Anne DellDepartment of Life Sciences, Imperial College London, London SW7 2AZ, UK.
Heidi Erlandsen1] Department of Periodontology, School of Medicine, University of Alabama at Birmingham, Birmingham, Alabama 35294, USA [2] Institute of Oral Health Research, School of Medicine, University of Alabama at Birmingham, Birmingham, Alabama 35294, USA.
Hui WuDepartments of Pediatric Dentistry, Microbiology, Schools of Dentistry and Medicine, University of Alabama at Birmingham, Birmingham, Alabama 35294, USA.
University of Alabama at Birmingham · USImperial College London · GB

Funding

Glycosylation & Function of an Oral Streptococcal AdhesinR01DE017954 · NIDCR · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI WU, HUI · 2007 to 2022
$5.8M
Training in structural biology & glycobiologyF33DE022215 · NIDCR · IMPERIAL COLLEGE OF SCIENCE, TECHNOLOGY AND MEDICINE · PI WU, HUI · 2012 to 2012
$64k
Biotechnology and Biological Sciences Research CouncilNIDCR NIH HHS F33 DE022215NIDCR NIH HHS F33DE022215NIDCR NIH HHS R01 DE017954NIDCR NIH HHS R01DE017954
6 · The paper itself

Abstract

More than 33,000 glycosyltransferases have been identified. Structural studies, however, have only revealed two distinct glycosyltransferase (GT) folds, GT-A and GT-B. Here we report a 1.34-Å resolution X-ray crystallographic structure of a previously uncharacterized 'domain of unknown function' 1792 (DUF1792) and show that the domain adopts a new fold and is required for glycosylation of a family of serine-rich repeat streptococcal adhesins. Biochemical studies reveal that the domain is a glucosyltransferase, and it catalyses the transfer of glucose to the branch point of the hexasaccharide O-linked to the serine-rich repeat of the bacterial adhesin, Fap1 of Streptococcus parasanguinis. DUF1792 homologues from both Gram-positive and Gram-negative bacteria also exhibit the activity. Thus, DUF1792 represents a new family of glycosyltransferases; therefore, we designate it as a GT-D glycosyltransferase fold. As the domain is highly conserved in bacteria and not found in eukaryotes, it can be explored as a new antibacterial target.

Indexed as

Bacterial ProteinsCrystallography, X-RayGene Expression Regulation, BacterialGlycosyltransferasesStreptococcusBacterial ProteinsGlycosyltransferases

Identifiers

PMID25023666
PMCPMC4352575
OpenAlexW1994095141

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.