Evidence map›Paper›PMID 25023282›Full record

ArticleThe Journal of biological chemistry2014

Molecular evolution of the tissue-nonspecific alkaline phosphatase allows prediction and validation of missense mutations responsible for hypophosphatasia.

Jérémie Silvent, Barbara Gasse, Etienne Mornet, Jean-Yves Sire

Open access · hybridAbstract readValidation Study
In one paragraph

Article in The Journal of biological chemistry, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers.

0numbers the graph read from it
0cells of the map it votes in
43citing papers in PubMed
4.1field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

43 citing papers in PubMed, 64 citations in OpenAlex.

  1. Trial
  2. Identification of hypophosphatasia in adults with persistent hypophosphatasemia: clinical-genetic characterization and a validated diagnostic tool.Osteoporosis international : a journal established as result of cooperation between the European Foundation for Osteoporosis and the National Osteoporosis Foundation of the USA · 2026
    Article
  3. Review
  4. External validation of the proposed diagnostic criteria for hypophosphatasia in adults of a Spanish cohort.Osteoporosis international : a journal established as result of cooperation between the European Foundation for Osteoporosis and the National Osteoporosis Foundation of the USA · 2026
    Article
  5. Article
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  9. Establishment of human periodontal ligament cell lines withFrontiers in cell and developmental biology · 2025
    Article
  10. Article
  11. Article
  12. Article
  13. Current status ofRSC advances · 2023
    Review
  14. A unique case of childhood hypophosphatasia caused by a novel heterozygous 51-bp in-frame deletion in theClinical pediatric endocrinology : case reports and clinical investigations : official journal of the Japanese Society for Pediatric Endocrinology · 2023
    Article
  15. Atypical Femoral Fracture in Hypophosphatasia: A Systematic Review.International journal of endocrinology · 2023
    Article
  16. Article
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  19. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Jérémie SilventFrom the Université Pierre & Marie Curie, IBPS, Evolution Paris Seine, 7 quai St-Bernard, Case 05, 75005 Paris and.
Barbara GasseFrom the Université Pierre & Marie Curie, IBPS, Evolution Paris Seine, 7 quai St-Bernard, Case 05, 75005 Paris and.
Etienne Mornetthe Unité de Pathologie Cellulaire et Génétique, EA2493, Université de Versailles-Saint Quentin en Yvelines, Versailles & Unité de Génétique Constitutionnelle, Centre Hospitalier de Versailles, 78150 Le Chesnay, France.
Jean-Yves SireFrom the Université Pierre & Marie Curie, IBPS, Evolution Paris Seine, 7 quai St-Bernard, Case 05, 75005 Paris and jean-yves.sire@upmc.fr.
Université de Versailles Saint-Quentin-en-Yvelines · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

ALPL encodes the tissue nonspecific alkaline phosphatase (TNSALP), which removes phosphate groups from various substrates. Its function is essential for bone and tooth mineralization. In humans, ALPL mutations lead to hypophosphatasia, a genetic disorder characterized by defective bone and/or tooth mineralization. To date, 275 ALPL mutations have been reported to cause hypophosphatasia, of which 204 were simple missense mutations. Molecular evolutionary analysis has proved to be an efficient method to highlight residues important for the protein function and to predict or validate sensitive positions for genetic disease. Here we analyzed 58 mammalian TNSALP to identify amino acids unchanged, or only substituted by residues sharing similar properties, through 220 millions years of mammalian evolution. We found 469 sensitive positions of the 524 residues of human TNSALP, which indicates a highly constrained protein. Any substitution occurring at one of these positions is predicted to lead to hypophosphatasia. We tested the 204 missense mutations resulting in hypophosphatasia against our predictive chart, and validated 99% of them. Most sensitive positions were located in functionally important regions of TNSALP (active site, homodimeric interface, crown domain, calcium site, …). However, some important positions are located in regions, the structure and/or biological function of which are still unknown. Our chart of sensitive positions in human TNSALP (i) enables to validate or invalidate at low cost any ALPL mutation, which would be suspected to be responsible for hypophosphatasia, by contrast with time consuming and expensive functional tests, and (ii) displays higher predictive power than in silico models of prediction.

Indexed as

Evolution, MolecularMutation, MissenseAlkaline PhosphataseAmino Acid SequenceAmino Acid SubstitutionAnimalsBase SequenceDNA PrimersHumansHypophosphatasiaMolecular Sequence DataPhylogenyProtein Processing, Post-TranslationalAlkaline PhosphataseDNA PrimersBioinformaticsGenetic DiseaseHuman GeneticsMammalMolecular Evolution

Identifiers

PMID25023282
PMCPMC4148848
OpenAlexW1963914857

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.