Evidence map›Paper›PMID 25022982›Full record

ArticleBMC infectious diseases2014

Cholera outbreaks (2012) in three districts of Nepal reveal clonal transmission of multi-drug resistant Vibrio cholerae O1.

Sameer M Dixit, Fatema-Tuz Johura, Sulochana Manandhar, Abdus Sadique, Rajesh M Rajbhandari, Shahnewaj B Mannan, Mahamud-Ur Rashid, Saiful Islam, Dibesh Karmacharya, Haruo Watanabe and 3 more

Abstract read
In one paragraph

Article in BMC infectious diseases, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed, 2 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 2 syntheses or guidelines pooled it.

  1. Antimicrobial resistance among clinicalPathogens and global health · 2023
    Pooled it
  2. Pooled it
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  4. Review
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  9. Characterisation ofThe Pan African medical journal · 2020
    Article
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  14. Emergency response in water, sanitation and hygiene to control cholera in post-earthquake Nepal in 2016.Journal of water, sanitation, and hygiene for development : a journal of the International Water Association · 2018
    Article
  15. Article
  16. Article
  17. Frontiers in microbiology · 2017
    Article
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  19. Article
  20. Is a Cholera Outbreak Preventable in Post-earthquake Nepal?PLoS neglected tropical diseases · 2015
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Sameer M Dixit
Fatema-Tuz Johura
Sulochana Manandhar
Abdus Sadique
Rajesh M Rajbhandari
Shahnewaj B Mannan
Mahamud-Ur Rashid
Saiful Islam
Dibesh Karmacharya
Haruo Watanabe
R Bradley Sack
Alejandro Cravioto
Munirul AlamInternational Centre for Diarrheal Disease Research, GPO Box 128, 1000 Dhaka, Bangladesh. munirul@icddrb.org.

Funding

PHS HHS 1R01A13912901
6 · The paper itself

Abstract

backgroundAlthough endemic cholera causes significant morbidity and mortality each year in Nepal, lack of information about the causal bacterium often hinders cholera intervention and prevention. In 2012, diarrheal outbreaks affected three districts of Nepal with confirmed cases of mortality. This study was designed to understand the drug response patterns, source, and transmission of Vibrio cholerae associated with 2012 cholera outbreaks in Nepal.

methodsV. cholerae (n = 28) isolated from 2012 diarrhea outbreaks {n = 22; Kathmandu (n = 12), Doti (n = 9), Bajhang (n = 1)}, and surface water (n = 6; Kathmandu) were tested for antimicrobial response. Virulence properties and DNA fingerprinting of the strains were determined by multi-locus genetic screening employing polymerase chain reaction, DNA sequencing, and pulsed-field gel electrophoresis (PFGE).

resultsAll V. cholerae strains isolated from patients and surface water were confirmed to be toxigenic, belonging to serogroup O1, Ogawa serotype, biotype El Tor, and possessed classical biotype cholera toxin (CTX). Double-mismatch amplification mutation assay (DMAMA)-PCR revealed the V. cholerae strains to possess the B-7 allele of ctx subunit B. DNA sequencing of tcpA revealed a point mutation at amino acid position 64 (N → S) while the ctxAB promoter revealed four copies of the tandem heptamer repeat sequence 5'-TTTTGAT-3'. V. cholerae possessed all the ORFs of the Vibrio seventh pandemic island (VSP)-I but lacked the ORFs 498-511 of VSP-II. All strains were multidrug resistant with resistance to trimethoprim-sulfamethoxazole (SXT), nalidixic acid (NA), and streptomycin (S); all carried the SXT genetic element. DNA sequencing and deduced amino acid sequence of gyrA and parC of the NAR strains (n = 4) revealed point mutations at amino acid positions 83 (S → I), and 85 (S → L), respectively. Similar PFGE (NotI) pattern revealed the Nepalese V. cholerae to be clonal, and related closely with V. cholerae associated with cholera in Bangladesh and Haiti.

conclusionsIn 2012, diarrhea outbreaks in three districts of Nepal were due to transmission of multidrug resistant V. cholerae El Tor possessing cholera toxin (ctx) B-7 allele, which is clonal and related closely with V. cholerae associated with cholera in Bangladesh and Haiti.

Indexed as

Disease OutbreaksDrug Resistance, Multiple, BacterialAnti-Bacterial AgentsCholeraDiarrheaDNA FingerprintingElectrophoresis, Gel, Pulsed-FieldHumansNepalOpen Reading FramesPhenotypePolymerase Chain ReactionSequence Analysis, DNAVibrio cholerae O1VirulenceAnti-Bacterial Agents

Identifiers

PMID25022982
PMCPMC4223374

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.