Evidence map›Paper›PMID 25017802›Full record

ArticleBiochimica et biophysica acta2015

Cellular solid-state NMR investigation of a membrane protein using dynamic nuclear polarization.

Kazutoshi Yamamoto, Marc A Caporini, Sang-Choul Im, Lucy Waskell, Ayyalusamy Ramamoorthy

Open access · greenAbstract read
In one paragraph

Article in Biochimica et biophysica acta, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
5.3field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 86 citations in OpenAlex.

  1. Article
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  13. Targetable Tetrazine-Based Dynamic Nuclear Polarization Agents for Biological Systems.Chembiochem : a European journal of chemical biology · 2020
    Article
  14. Review
  15. DNP-Supported Solid-State NMR Spectroscopy of Proteins Inside Mammalian Cells.Angewandte Chemie (International ed. in English) · 2019
    Article
  16. Stability of nitroxide biradical TOTAPOL in biological samples.Journal of magnetic resonance (San Diego, Calif. : 1997) · 2019
    Article
  17. Article
  18. CombinedStructure (London, England : 1993) · 2018
    Article
  19. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Kazutoshi YamamotoBiophysics and Department of Chemistry, University of Michigan, Ann Arbor, MI 48109-1055, USA.
Marc A CaporiniBruker BioSpin Corporation, 15 Fortune Drive, Billerica, MA 01821, USA.
Sang-Choul ImDepartment of Anesthesiology, University of Michigan, Ann Arbor, MI 48105, USA; VA Medical Center, Ann Arbor, MI 48105, USA.
Lucy WaskellDepartment of Anesthesiology, University of Michigan, Ann Arbor, MI 48105, USA; VA Medical Center, Ann Arbor, MI 48105, USA.
Ayyalusamy RamamoorthyBiophysics and Department of Chemistry, University of Michigan, Ann Arbor, MI 48109-1055, USA. Electronic address: ramamoor@umich.edu.
University of Michigan · USBruker (United States) · US

Funding

Supplement: Investigation of Membrane-Bound Cytochromes-P450-b5 InteractionsR01GM084018 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI RAMAMOORTHY, AYYALUSAMY · 2009 to 2018
$3.8M
PARTICIPATION OF CYTOCHROME B5 IN ANESTHETIC METABOLISMR01GM035533 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI WASKELL, LUCY A · 1985 to 2010
$2.7M
Rapid and efficient production of functional Cytochrome P450 enzymatic complex foR01GM095640 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI RAMAMOORTHY, AYYALUSAMY · 2010 to 2013
$1.3M
NIGMS NIH HHS GM035533NIGMS NIH HHS GM084018NIGMS NIH HHS GM095640NIGMS NIH HHS R01 GM035533NIGMS NIH HHS R01 GM084018NIGMS NIH HHS R01 GM095640
6 · The paper itself

Abstract

While an increasing number of structural biology studies successfully demonstrate the power of high-resolution structures and dynamics of membrane proteins in fully understanding their function, there is considerable interest in developing NMR approaches to obtain such information in a cellular setting. As long as the proteins inside the living cell tumble rapidly in the NMR timescale, recently developed in-cell solution NMR approaches can provide 3D structural information. However, there are numerous challenges to study membrane proteins inside a cell. Research in our laboratory is focused on developing a combination of solid-state NMR and biological approaches to overcome these challenges in order to obtain high-resolution structural insights into electron transfer processes mediated by membrane-bound proteins like mammalian cytochrome-b5, cytochrome-P450 and cytochrome-P450-reductase. In this study, we demonstrate the feasibility of using dynamic nuclear polarization (DNP) magic angle spinning (MAS) NMR spectroscopy for in-cell studies on a membrane-anchored protein. Our experimental results obtained from ¹³C-labeled membrane-anchored cytochrome-b5 in native Escherichia coli cells show a ~16-fold DNP signal enhancement. Further, results obtained from a 2D ¹³C/¹³C chemical shift correlation MAS experiment demonstrate the feasibility of suppressing the background signals from other cellular contents for high-resolution structural studies on membrane proteins. We believe that this study would pave new avenues for high-resolution structural studies on a variety of membrane-associated proteins and their complexes in the cellular context to fully understand their functional roles in physiological processes.

Indexed as

Amino Acid SequenceCytochromes b5Escherichia coliMagnetic Resonance SpectroscopyMembrane ProteinsMolecular Sequence DataCytochromes b5Membrane ProteinsDynamic nuclear polarizationIn-cell NMR spectroscopyLipid bilayersMembrane proteinSolid-state NMR spectroscopyStructural biology

Identifiers

PMID25017802
PMCPMC4258513
OpenAlexW2019264211

What OpenQuestion holds

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LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.