Evidence map›Paper›PMID 25016594›Full record

ArticleNeoplasia (New York, N.Y.)2014

Pathway-centric integrative analysis identifies RRM2 as a prognostic marker in breast cancer associated with poor survival and tamoxifen resistance.

Nagireddy Putluri, Suman Maity, Ramakrishna Kommagani, Ramakrishna Kommangani, Chad J Creighton, Vasanta Putluri, Fengju Chen, Sarmishta Nanda, Salil Kumar Bhowmik, Atsushi Terunuma and 12 more

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in Neoplasia (New York, N.Y.), 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 51 papers.

0numbers the graph read from it
0cells of the map it votes in
51citing papers in PubMed
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

51 citing papers in PubMed, 89 citations in OpenAlex.

  1. Article
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  4. Review
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  6. Frontiers in oncology · 2025
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4 · The record

Corrections and comments

  • Erratum issued
    Kommangani, Ramakrishna [corrected to Kommagani, Ramakrishna]
5 · Who and what money

Authors and funding

22 authors at 5 institutions in 1 country.

Nagireddy PutluriDepartment of Molecular and Cell Biology, Baylor College of Medicine, Houston, TX, USA; Verna and Marrs McLean Department of Biochemistry, Baylor College of Medicine, Houston, TX, USA; Alkek Center for Molecular Discovery, Baylor College of Medicine, Houston, TX, USA.
Suman MaityDepartment of Molecular and Cell Biology, Baylor College of Medicine, Houston, TX, USA; Verna and Marrs McLean Department of Biochemistry, Baylor College of Medicine, Houston, TX, USA; Alkek Center for Molecular Discovery, Baylor College of Medicine, Houston, TX, USA.
Ramakrishna KommaganiDepartment of Molecular and Cell Biology, Baylor College of Medicine, Houston, TX, USA.
Ramakrishna KommanganiDepartment of Molecular and Cell Biology, Baylor College of Medicine, Houston, TX, USA.
Chad J CreightonDepartment of Medicine, Baylor College of Medicine, Houston, TX, USA; Dan L Duncan Cancer Center, Baylor College of Medicine, Houston, TX, USA.
Vasanta PutluriDepartment of Molecular and Cell Biology, Baylor College of Medicine, Houston, TX, USA; Verna and Marrs McLean Department of Biochemistry, Baylor College of Medicine, Houston, TX, USA; Alkek Center for Molecular Discovery, Baylor College of Medicine, Houston, TX, USA.
Fengju ChenDepartment of Medicine, Baylor College of Medicine, Houston, TX, USA; Dan L Duncan Cancer Center, Baylor College of Medicine, Houston, TX, USA.
Sarmishta NandaLester and Sue Smith Breast Center, Baylor College of Medicine, Houston, TX, USA.
Salil Kumar BhowmikDepartment of Molecular and Cell Biology, Baylor College of Medicine, Houston, TX, USA; Verna and Marrs McLean Department of Biochemistry, Baylor College of Medicine, Houston, TX, USA; Alkek Center for Molecular Discovery, Baylor College of Medicine, Houston, TX, USA.
Atsushi TerunumaLaboratory of Human Carcinogenesis, Center for Cancer Research, National Cancer Institute, National Institutes of Health, Bethesda, MD, USA.
Tiffany DorseyLaboratory of Human Carcinogenesis, Center for Cancer Research, National Cancer Institute, National Institutes of Health, Bethesda, MD, USA.
Agostina NardoneLester and Sue Smith Breast Center, Baylor College of Medicine, Houston, TX, USA.
Xiaoyong FuLester and Sue Smith Breast Center, Baylor College of Medicine, Houston, TX, USA.
Chad ShawDepartment of Medicine, Baylor College of Medicine, Houston, TX, USA; Dan L Duncan Cancer Center, Baylor College of Medicine, Houston, TX, USA.
Tapasree Roy SarkarDepartment of Molecular Pathology, The University of Texas MD Anderson Cancer Center, Houston, TX, USA.
Rachel SchiffDepartment of Molecular and Cell Biology, Baylor College of Medicine, Houston, TX, USA; Dan L Duncan Cancer Center, Baylor College of Medicine, Houston, TX, USA; Lester and Sue Smith Breast Center, Baylor College of Medicine, Houston, TX, USA; Department of Medicine, Baylor College of Medicine, Houston, TX, USA.
John P LydonDepartment of Molecular and Cell Biology, Baylor College of Medicine, Houston, TX, USA.
Bert W O'MalleyDepartment of Molecular and Cell Biology, Baylor College of Medicine, Houston, TX, USA; Alkek Center for Molecular Discovery, Baylor College of Medicine, Houston, TX, USA; Dan L Duncan Cancer Center, Baylor College of Medicine, Houston, TX, USA.
Stefan AmbsLaboratory of Human Carcinogenesis, Center for Cancer Research, National Cancer Institute, National Institutes of Health, Bethesda, MD, USA.
Gokul M DasDepartment of Pharmacology and Therapeutics, Roswell Park Cancer Institute, Buffalo, NY, USA.
George MichailidisDepartment of Statistics, University of Michigan, Ann Arbor, MI, USA. Electronic address: gmichail@umich.edu.
Arun SreekumarDepartment of Molecular and Cell Biology, Baylor College of Medicine, Houston, TX, USA; Verna and Marrs McLean Department of Biochemistry, Baylor College of Medicine, Houston, TX, USA; Alkek Center for Molecular Discovery, Baylor College of Medicine, Houston, TX, USA; Dan L Duncan Cancer Center, Baylor College of Medicine, Houston, TX, USA. Electronic address: arun.sreekumar@bcm.edu.
Baylor College of Medicine · USNational Institutes of Health · USRoswell Park Comprehensive Cancer Center · USThe University of Texas MD Anderson Cancer Center · USUniversity of Michigan · US

Funding

Two-Spirit Films in Indigenous Cancer HealthP30CA016056 · NCI · ROSWELL PARK CANCER INSTITUTE CORP · PI MARK G FRATTINI · 1985 to 2026
$116.6M
Tumor BiologyP30CA125123 · NCI · BAYLOR COLLEGE OF MEDICINE · PI DAVID R ROWLEY · 2007 to 2026
$73.9M
REPRODUCTIVE HORMONES: BIOLOGICAL AND MOLECULAR ACTIONSR01HD008188 · NICHD · BAYLOR COLLEGE OF MEDICINE · PI DAVID M LONARD, JOHN P LYDON · 1985 to 2026
$16.3M
SEX HORMONE RECEPTOR COMPONENTS AND THE CELL GENOMER01HD007857 · NICHD · BAYLOR COLLEGE OF MEDICINE · PI DAVID M LONARD, JOHN P LYDON · 1985 to 2026
$14.6M
Novel Markers for Disease Outcome in Breast CancerZIABC010887 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI AMBS, STEFAN · 2009 to 2025
$11.5M
METABOLOMIC PROFILING AND BIOLOGIC BASIS OF RACIAL DISPARITY IN PROSTATE CANCERU01CA167234 · NCI · BAYLOR COLLEGE OF MEDICINE · PI PALAPATTU, GANESH S, SREEKUMAR, ARUN · 2012 to 2016
$1.9M
SEX HORMONE RECEPTOR COMPONENTS &THE CELL GENOMER37HD007857 · NICHD · BAYLOR COLLEGE OF MEDICINE · PI MC KEOWN, MICHAEL B · 1987 to 1996
–
NCI NIH HHS NCI-P30CA016056-32NCI NIH HHS NCI P30 CA125123NCI NIH HHS P30 CA016056NCI NIH HHS P30 CA125123NCI NIH HHS U01 CA167234NICHD NIH HHS HD-07857NICHD NIH HHS R01 HD007857NICHD NIH HHS R01 HD008188
6 · The paper itself

Abstract

Breast cancer (BCa) molecular subtypes include luminal A, luminal B, normal-like, HER-2-enriched, and basal-like tumors, among which luminal B and basal-like cancers are highly aggressive. Biochemical pathways associated with patient survival or treatment response in these more aggressive subtypes are not well understood. With the limited availability of pathologically verified clinical specimens, cell line models are routinely used for pathway-centric studies. We measured the metabolome of luminal and basal-like BCa cell lines using mass spectrometry, linked metabolites to biochemical pathways using Gene Set Analysis, and developed a novel rank-based method to select pathways on the basis of their enrichment in patient-derived omics data sets and prognostic relevance. Key mediators of the pathway were then characterized for their role in disease progression. Pyrimidine metabolism was altered in luminal versus basal BCa, whereas the combined expression of its associated genes or expression of one key gene, ribonucleotide reductase subunit M2 (RRM2) alone, associated significantly with decreased survival across all BCa subtypes, as well as in luminal patients resistant to tamoxifen. Increased RRM2 expression in tamoxifen-resistant patients was verified using tissue microarrays, whereas the metabolic products of RRM2 were higher in tamoxifen-resistant cells and in xenograft tumors. Both genetic and pharmacological inhibition of this key enzyme in tamoxifen-resistant cells significantly decreased proliferation, reduced expression of cell cycle genes, and sensitized the cells to tamoxifen treatment. Our study suggests for evaluating RRM2-associated metabolites as noninvasive markers for tamoxifen resistance and its pharmacological inhibition as a novel approach to overcome tamoxifen resistance in BCa.

Indexed as

Antineoplastic Agents, HormonalBiomarkers, TumorBreast NeoplasmsCell Line, TumorDrug Resistance, NeoplasmFemaleHumansImage Processing, Computer-AssistedImmunohistochemistryIn Vitro TechniquesKaplan-Meier EstimateMass SpectrometryMetabolomeMetabolomicsOligonucleotide Array Sequence AnalysisPrognosisAntineoplastic Agents, HormonalBiomarkers, TumorRibonucleoside Diphosphate Reductaseribonucleotide reductase M2Tamoxifen

Identifiers

PMID25016594
PMCPMC4198742
OpenAlexW1990542495

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LicenceCC BY-NC-ND
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.