Evidence map›Paper›PMID 25016576›Full record

ArticleMolecular immunology2014

Characterization of a monoclonal antibody to a novel glycan-dependent epitope in the V1/V2 domain of the HIV-1 envelope protein, gp120.

Rachel C Doran, Javier F Morales, Briana To, Trevor J Morin, Richard Theolis, Sara M O'Rourke, Bin Yu, Kathryn A Mesa, Phillip W Berman

Abstract read
In one paragraph

Article in Molecular immunology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.2field-weighted citation impact, top 52% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
  2. Article
  3. Development of a Stable MGAT1Frontiers in immunology · 2018
    Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Rachel C Doran *Department of Biomolecular Engineering, University of California, Santa Cruz, Santa Cruz, California, United States of America.
Javier F Morales *Department of Biomolecular Engineering, University of California, Santa Cruz, Santa Cruz, California, United States of America.
Briana ToDepartment of Biomolecular Engineering, University of California, Santa Cruz, Santa Cruz, California, United States of America.
Trevor J MorinDepartment of Biomolecular Engineering, University of California, Santa Cruz, Santa Cruz, California, United States of America.
Richard TheolisDepartment of Biomolecular Engineering, University of California, Santa Cruz, Santa Cruz, California, United States of America.
Sara M O'RourkeDepartment of Biomolecular Engineering, University of California, Santa Cruz, Santa Cruz, California, United States of America.
Bin YuDepartment of Biomolecular Engineering, University of California, Santa Cruz, Santa Cruz, California, United States of America.
Kathryn A MesaDepartment of Biomolecular Engineering, University of California, Santa Cruz, Santa Cruz, California, United States of America.
Phillip W BermanDepartment of Biomolecular Engineering, University of California, Santa Cruz, Santa Cruz, California, United States of America.
University of California, Santa Cruz · US

Funding

Re-engineering gp120 to include glycan-dependent epitopesR01AI113893 · NIAID · UNIVERSITY OF CALIFORNIA SANTA CRUZ · PI BERMAN, PHILLIP WAYNE · 2014 to 2017
$4.2M
HIV Variation in Injection Drug Users: Mapping Broadly Neutralizing AntibodiesR01DA026801 · NIDA · UNIVERSITY OF CALIFORNIA SANTA CRUZ · PI BERMAN, PHILLIP WAYNE · 2009 to 2013
$3.2M
Refocusing the Immune Response to the HIV Envelope GlycoproteinR01AI089378 · NIAID · UNIVERSITY OF CALIFORNIA SANTA CRUZ · PI BERMAN, PHILLIP WAYNE · 2010 to 2013
$3.1M
NIAID NIH HHS R01 AI089378NIAID NIH HHS R01 AI089378 01NIAID NIH HHS R01 AI113893NIDA NIH HHS R01 DA026801NIDA NIH HHS R01 DA 26801-01A1
6 · The paper itself

Abstract

Recent studies have described several broadly neutralizing monoclonal antibodies (bN-mAbs) that recognize glycan-dependent epitopes (GDEs) in the HIV-1 envelope protein, gp120. These were recovered from HIV-1 infected subjects, and several (e.g., PG9, PG16, CH01, CH03) target glycans in the first and second variable (V1/V2) domain of gp120. The V1/V2 domain is thought to play an important role in conformational masking, and antibodies to the V1/V2 domain were recently identified as the only immune response that correlated with protection in the RV144 HIV-1 vaccine trial. While the importance of antibodies to polymeric glycans is well established for vaccines targeting bacterial diseases, the importance of antibodies to glycans in vaccines targeting HIV has only recently been recognized. Antibodies to GDEs may be particularly significant in HIV vaccines based on gp120, where 50% of the molecular mass of the envelope protein is contributed by N-linked carbohydrate. However, few studies have reported antibodies to GDEs in humans or animals immunized with candidate HIV-1 vaccines. In this report, we describe the isolation of a mouse mAb, 4B6, after immunization with the extracellular domain of the HIV-1 envelope protein, gp140. Epitope mapping using glycopeptide fragments and in vitro mutagenesis showed that binding of this antibody depends on N-linked glycosylation at asparagine N130 (HXB2 numbering) in the gp120 V1/V2 domain. Our results demonstrate that, in addition to natural HIV-1 infection, immunization with recombinant proteins can elicit antibodies to the GDEs in the V1/V2 domain of gp120. Although little is known regarding conditions that favor antibody responses to GDEs, our studies demonstrate that these antibodies can arise from a short-term immunization regimen. Our results suggest that antibodies to GDEs are more common than previously suspected, and that further analysis of antibody responses to the HIV-1 envelope protein will lead to the discovery of additional antibodies to GDEs.

Indexed as

AIDS VaccinesAmino Acid SequenceAnimalsAntibodies, MonoclonalAntibodies, NeutralizingCells, CulturedEpitope MappingEpitopesHEK293 CellsHIV Envelope Protein gp120HumansMiceMice, Inbred BALB CMolecular Sequence DataMutagenesis, Site-DirectedPolysaccharidesAIDS VaccinesAntibodies, MonoclonalAntibodies, NeutralizingEpitopesHIV Envelope Protein gp120PolysaccharidesEpitopeGlycosylationGp120HIVMonoclonal antibodyV1/V2 domain

Identifiers

PMID25016576
PMCPMC4157072
OpenAlexW1996394583

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.