Evidence map›Paper›PMID 25016215›Full record

ArticleMechanisms of development2014

A developmental genetic analysis of the lysine demethylase KDM2 mutations in Drosophila melanogaster.

Yani Zheng, Fu-Ning Hsu, Wu Xu, Xiao-Jun Xie, Xinjie Ren, Xinsheng Gao, Jian-Quan Ni, Jun-Yuan Ji

Open access · greenAbstract read
In one paragraph

Article in Mechanisms of development, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
0.9field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 19 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Targeted Downregulation ofJournal of Korean medical science · 2019
    Article
  6. Article
  7. Review
  8. Article
  9. Article
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  11. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Yani ZhengDepartment of Molecular and Cellular Medicine, College of Medicine, Texas A&M University Health Science Center, College Station, TX 77843, United States.
Fu-Ning HsuDepartment of Molecular and Cellular Medicine, College of Medicine, Texas A&M University Health Science Center, College Station, TX 77843, United States.
Wu XuDepartment of Chemistry, University of Louisiana at Lafayette, P.O. Box 44370, Lafayette, LA 70504, United States.
Xiao-Jun XieDepartment of Molecular and Cellular Medicine, College of Medicine, Texas A&M University Health Science Center, College Station, TX 77843, United States.
Xinjie RenGene Regulatory Laboratory, School of Medicine, Tsinghua University, Beijing 100084, China.
Xinsheng GaoDepartment of Molecular and Cellular Medicine, College of Medicine, Texas A&M University Health Science Center, College Station, TX 77843, United States.
Jian-Quan NiGene Regulatory Laboratory, School of Medicine, Tsinghua University, Beijing 100084, China.
Jun-Yuan JiDepartment of Molecular and Cellular Medicine, College of Medicine, Texas A&M University Health Science Center, College Station, TX 77843, United States. Electronic address: ji@medicine.tamhsc.edu.
Texas A&M Health Science Center · USTsinghua University · CNUniversity of Louisiana at Lafayette · US

Funding

Context-specific Functions of CDK8R01DK095013 · NIDDK · TEXAS A&M UNIVERSITY HEALTH SCIENCE CTR · PI JI, JUN-YUAN · 2013 to 2017
$1.5M
NIDDK NIH HHS 1R01DK095013NIDDK NIH HHS R01 DK095013
6 · The paper itself

Abstract

Post-translational modification of histones plays essential roles in the transcriptional regulation of genes in eukaryotes. Methylation on basic residues of histones is regulated by histone methyltransferases and histone demethylases, and misregulation of these enzymes has been linked to a range of diseases such as cancer. Histone lysine demethylase 2 (KDM2) family proteins have been shown to either promote or suppress tumorigenesis in different human malignancies. However, the roles and regulation of KDM2 in development are poorly understood, and the exact roles of KDM2 in regulating demethylation remain controversial. Since KDM2 proteins are highly conserved in multicellular animals, we analyzed the KDM2 ortholog in Drosophila. We have observed that dKDM2 is a nuclear protein and its level fluctuates during fly development. We generated three deficiency lines that disrupt the dKdm2 locus, and together with 10 transposon insertion lines within the dKdm2 locus, we characterized the developmental defects of these alleles. The alleles of dKdm2 define three phenotypic classes, and the intragenic complementation observed among these alleles and our subsequent analyses suggest that dKDM2 is not required for viability. In addition, loss of dKDM2 appears to have rather weak effects on histone H3 lysine 36 and 4 methylation (H3K36me and H3K4me) in the third instar wandering larvae, and we observed no effect on methylation of H3K9me2, H3K27me2 and H3K27me3 in dKdm2 mutants. Taken together, these genetic, molecular and biochemical analyses suggest that dKDM2 is not required for viability of flies, indicating that dKdm2 is likely redundant with other histone lysine demethylases in regulating normal development in Drosophila.

Indexed as

AnimalsAnimals, Genetically ModifiedChromosome DeletionConserved SequenceDNA Transposable ElementsDrosophila melanogasterDrosophila ProteinsGene Expression Regulation, DevelopmentalGene Expression Regulation, EnzymologicGene Knockout TechniquesGenes, InsectGenetic Complementation TestHumansJumonji Domain-Containing Histone DemethylasesMutationPhylogenyDNA Transposable ElementsDrosophila ProteinsJumonji Domain-Containing Histone DemethylasesDemethylaseDevelopmentDrosophilaHistone H3KDM2

Identifiers

PMID25016215
PMCPMC4177295
OpenAlexW2084955929

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.